Variant report

Variant	rs12354606
Chromosome Location	chr10:93374242-93374243
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:93368114..93370333-chr10:93371852..93374475,3	K562	blood:
2	chr10:93371223..93372891-chr10:93374209..93376452,2	K562	blood:
3	chr10:93367612..93370294-chr10:93370474..93375742,6	K562	blood:

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10786006	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10881931	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11186630	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11186639	0.89[EUR][1000 genomes]
rs11819558	0.82[ASN][1000 genomes]
rs11819574	0.82[ASN][1000 genomes]
rs17106864	0.85[ASN][1000 genomes]
rs17106868	0.85[ASN][1000 genomes]
rs17106892	0.82[ASN][1000 genomes]
rs2242121	0.99[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4933678	0.98[EUR][1000 genomes]
rs4933679	0.85[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs4933688	0.81[EUR][1000 genomes]
rs7071622	0.85[ASN][1000 genomes]
rs73320191	0.85[ASN][1000 genomes]
rs73322045	0.82[ASN][1000 genomes]
rs7907539	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv551914	chr10:93365015-93384073	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	esv3341903	chr10:93373522-93376220	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93368000-93388600	Weak transcription	Brain Angular Gyrus	brain
2	chr10:93369000-93387600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr10:93369400-93378600	Weak transcription	Fetal Intestine Small	intestine
4	chr10:93369400-93379200	Weak transcription	Liver	Liver
5	chr10:93369600-93387800	Weak transcription	Fetal Brain Male	brain
6	chr10:93371200-93376800	Weak transcription	Spleen	Spleen
7	chr10:93371400-93374400	Weak transcription	Fetal Muscle Trunk	muscle
8	chr10:93371400-93377000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr10:93371400-93381400	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr10:93371400-93383600	Weak transcription	Ovary	ovary
11	chr10:93371400-93383600	Weak transcription	Right Ventricle	heart
12	chr10:93371400-93386800	Weak transcription	Pancreas	Pancrea
13	chr10:93371600-93377000	Weak transcription	Esophagus	oesophagus
14	chr10:93372800-93374400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr10:93372800-93374400	Enhancers	Fetal Stomach	stomach
16	chr10:93372800-93374400	Enhancers	HUVEC	blood vessel
17	chr10:93373000-93374400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr10:93373000-93374400	Enhancers	Stomach Mucosa	stomach
19	chr10:93373000-93374400	Enhancers	HMEC	breast
20	chr10:93373000-93374600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr10:93373000-93374600	Enhancers	Fetal Muscle Leg	muscle
22	chr10:93373200-93374400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr10:93373200-93374600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr10:93373200-93374800	Enhancers	NHEK	skin
25	chr10:93373600-93379200	Weak transcription	Fetal Lung	lung
26	chr10:93373800-93380800	Weak transcription	Right Atrium	heart
27	chr10:93374000-93374800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr10:93374000-93376400	Weak transcription	Placenta Amnion	Placenta Amnion
29	chr10:93374000-93381400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
30	chr10:93374000-93384800	Weak transcription	Duodenum Smooth Muscle	Duodenum
31	chr10:93374000-93386200	Weak transcription	Left Ventricle	heart
32	chr10:93374000-93387000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
33	chr10:93374200-93374400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr10:93374200-93374400	Active TSS	Skeletal Muscle Female	skeletal muscle
35	chr10:93374200-93374400	Enhancers	HSMMtube	muscle
36	chr10:93374200-93374600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr10:93374200-93374600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr10:93374200-93374600	Enhancers	Muscle Satellite Cultured Cells	--
39	chr10:93374200-93374600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
40	chr10:93374200-93374600	Enhancers	Hela-S3	cervix
41	chr10:93374200-93374600	Enhancers	NH-A	brain
42	chr10:93374200-93375400	Weak transcription	NHDF-Ad	bronchial
43	chr10:93374200-93376000	Weak transcription	Rectal Smooth Muscle	rectum
44	chr10:93374200-93376000	Weak transcription	Osteobl	bone
45	chr10:93374200-93377000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
46	chr10:93374200-93377000	Weak transcription	Psoas Muscle	Psoas
47	chr10:93374200-93377000	Weak transcription	Skeletal Muscle Male	skeletal muscle
48	chr10:93374200-93377000	Weak transcription	HSMM	muscle
49	chr10:93374200-93377000	Weak transcription	K562	blood
50	chr10:93374200-93377000	Weak transcription	NHLF	lung

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