Variant report

Variant	rs4933679
Chromosome Location	chr10:93378452-93378453
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:93367415..93370402-chr10:93376929..93379276,2	K562	blood:
2	chr10:93375188..93376792-chr10:93378413..93380408,2	K562	blood:
3	chr10:93377962..93379937-chr10:93386628..93388397,2	MCF-7	breast:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10786006	0.99[EUR][1000 genomes]
rs10881931	0.97[EUR][1000 genomes]
rs11186630	0.96[EUR][1000 genomes]
rs11186635	1.00[CHB][hapmap]
rs11186639	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12261209	1.00[CHB][hapmap]
rs12354606	0.85[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs2242121	0.83[CEU][hapmap];0.91[EUR][1000 genomes]
rs4933678	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4933688	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7085998	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv551914	chr10:93365015-93384073	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93368000-93388600	Weak transcription	Brain Angular Gyrus	brain
2	chr10:93369000-93387600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr10:93369400-93378600	Weak transcription	Fetal Intestine Small	intestine
4	chr10:93369400-93379200	Weak transcription	Liver	Liver
5	chr10:93369600-93387800	Weak transcription	Fetal Brain Male	brain
6	chr10:93371400-93381400	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr10:93371400-93383600	Weak transcription	Ovary	ovary
8	chr10:93371400-93383600	Weak transcription	Right Ventricle	heart
9	chr10:93371400-93386800	Weak transcription	Pancreas	Pancrea
10	chr10:93373600-93379200	Weak transcription	Fetal Lung	lung
11	chr10:93373800-93380800	Weak transcription	Right Atrium	heart
12	chr10:93374000-93381400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr10:93374000-93384800	Weak transcription	Duodenum Smooth Muscle	Duodenum
14	chr10:93374000-93386200	Weak transcription	Left Ventricle	heart
15	chr10:93374000-93387000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr10:93374200-93383000	Weak transcription	Fetal Heart	heart
17	chr10:93374200-93384000	Weak transcription	Stomach Smooth Muscle	stomach
18	chr10:93376200-93379000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr10:93377200-93379400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr10:93377400-93378600	Enhancers	Hela-S3	cervix
21	chr10:93377400-93379200	Weak transcription	Skeletal Muscle Female	skeletal muscle
22	chr10:93377400-93379800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr10:93377400-93381600	Weak transcription	Fetal Stomach	stomach
24	chr10:93377400-93384200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr10:93377400-93386200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr10:93377400-93386800	Weak transcription	Stomach Mucosa	stomach
27	chr10:93377400-93387600	Weak transcription	Esophagus	oesophagus
28	chr10:93377400-93387600	Weak transcription	HSMM	muscle
29	chr10:93377400-93387800	Weak transcription	Psoas Muscle	Psoas
30	chr10:93377400-93389600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr10:93377600-93379200	Weak transcription	Skeletal Muscle Male	skeletal muscle
32	chr10:93377600-93379600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr10:93377600-93384000	Weak transcription	NHLF	lung
34	chr10:93377600-93387600	Weak transcription	NHEK	skin
35	chr10:93377600-93387800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
36	chr10:93377600-93388000	Weak transcription	HSMMtube	muscle
37	chr10:93377800-93387600	Weak transcription	Muscle Satellite Cultured Cells	--

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