Variant report

Variant	rs11186635
Chromosome Location	chr10:93387502-93387503
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:93387435..93391591-chr10:93392416..93396501,4	K562	blood:
2	chr10:93384412..93386495-chr10:93387142..93388723,2	K562	blood:
3	chr10:93377962..93379937-chr10:93386628..93388397,2	MCF-7	breast:
4	chr10:93311805..93313050-chr10:93387452..93388202,3	MCF-7	breast:
5	chr10:93386300..93388872-chr10:93393581..93396543,2	MCF-7	breast:
6	chr10:93386755..93389232-chr10:93390987..93394775,3	MCF-7	breast:
7	chr10:93387435..93390652-chr10:93392972..93396624,3	K562	blood:
8	chr10:93386594..93389041-chr10:93389303..93393326,7	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000119938	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11186631	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12261209	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];0.81[LWK][hapmap];1.00[MEX][hapmap];0.84[MKK][hapmap];1.00[TSI][hapmap];0.90[YRI][hapmap];0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1967844	1.00[ASN][1000 genomes]
rs61874551	1.00[ASN][1000 genomes]
rs61874552	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61874553	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61874554	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61874555	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61874557	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61876102	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61876105	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs61876108	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61876134	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61876136	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61876137	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61876138	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61876139	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6583778	0.83[ASN][1000 genomes]
rs7085998	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[GIH][hapmap];1.00[MEX][hapmap];0.92[TSI][hapmap];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93368000-93388600	Weak transcription	Brain Angular Gyrus	brain
2	chr10:93369000-93387600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr10:93369600-93387800	Weak transcription	Fetal Brain Male	brain
4	chr10:93377400-93387600	Weak transcription	Esophagus	oesophagus
5	chr10:93377400-93387600	Weak transcription	HSMM	muscle
6	chr10:93377400-93387800	Weak transcription	Psoas Muscle	Psoas
7	chr10:93377400-93389600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr10:93377600-93387600	Weak transcription	NHEK	skin
9	chr10:93377600-93387800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr10:93377600-93388000	Weak transcription	HSMMtube	muscle
11	chr10:93377800-93387600	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr10:93378600-93389000	Weak transcription	Hela-S3	cervix
13	chr10:93382000-93387600	Weak transcription	HepG2	liver
14	chr10:93382200-93387800	Weak transcription	Lung	lung
15	chr10:93382600-93387600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
16	chr10:93382800-93387600	Weak transcription	Brain Anterior Caudate	brain
17	chr10:93382800-93387600	Weak transcription	Colon Smooth Muscle	Colon
18	chr10:93382800-93388200	Weak transcription	Brain Inferior Temporal Lobe	brain
19	chr10:93383000-93388200	Weak transcription	Pancreatic Islets	Pancreatic Islet
20	chr10:93383000-93388600	Weak transcription	Brain Hippocampus Middle	brain
21	chr10:93383800-93387600	Weak transcription	Fetal Muscle Trunk	muscle
22	chr10:93383800-93387600	Weak transcription	Osteobl	bone
23	chr10:93383800-93388200	Strong transcription	Cortex derived primary cultured neurospheres	brain
24	chr10:93384000-93388600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr10:93384200-93387600	Weak transcription	Rectal Smooth Muscle	rectum
26	chr10:93384800-93387600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr10:93385000-93387800	Weak transcription	NHLF	lung
28	chr10:93385000-93391800	Weak transcription	NH-A	brain
29	chr10:93385000-93392400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr10:93385200-93387800	Weak transcription	Right Ventricle	heart
31	chr10:93385200-93388000	Strong transcription	Fetal Intestine Small	intestine
32	chr10:93385400-93389200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
33	chr10:93385600-93387600	Genic enhancers	Fetal Stomach	stomach
34	chr10:93385600-93387800	Enhancers	NHDF-Ad	bronchial
35	chr10:93385600-93388600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
36	chr10:93386200-93388800	Strong transcription	Fetal Intestine Large	intestine
37	chr10:93386400-93387600	Enhancers	Liver	Liver
38	chr10:93386400-93387600	Genic enhancers	Stomach Smooth Muscle	stomach
39	chr10:93386400-93387800	Enhancers	Fetal Heart	heart
40	chr10:93386400-93392600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr10:93386600-93387800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr10:93386600-93389400	Weak transcription	Adipose Nuclei	Adipose
43	chr10:93386800-93387600	Strong transcription	Aorta	Aorta
44	chr10:93386800-93387600	Enhancers	Right Atrium	heart
45	chr10:93386800-93387800	Genic enhancers	Fetal Muscle Leg	muscle
46	chr10:93386800-93388400	Genic enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
47	chr10:93386800-93388600	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
48	chr10:93386800-93389600	Genic enhancers	Pancreas	Pancrea
49	chr10:93387000-93387600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
50	chr10:93387000-93387600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links