Variant report

Variant	rs61876137
Chromosome Location	chr10:93428737-93428738
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11186631	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11186635	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12261209	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1967844	1.00[ASN][1000 genomes]
rs61874551	1.00[ASN][1000 genomes]
rs61874552	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61874553	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61874554	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61874555	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61874557	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61876102	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61876105	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs61876108	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61876134	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61876136	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61876138	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61876139	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6583778	0.83[ASN][1000 genomes]
rs7085998	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948135	chr10:93423027-93430220	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93419200-93431400	Weak transcription	Psoas Muscle	Psoas
2	chr10:93424800-93449800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr10:93425800-93432000	Weak transcription	Osteobl	bone
4	chr10:93427000-93443400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr10:93427600-93431400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr10:93427600-93448800	Weak transcription	Liver	Liver
7	chr10:93428200-93429200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
8	chr10:93428200-93431200	Enhancers	iPS-15b Cell Line	embryonic stem cell
9	chr10:93428400-93429200	Enhancers	iPS-20b Cell Line	embryonic stem cell
10	chr10:93428400-93429400	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr10:93428600-93428800	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
12	chr10:93428600-93428800	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
13	chr10:93428600-93429000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr10:93428600-93429000	Enhancers	Cortex derived primary cultured neurospheres	brain
15	chr10:93428600-93429800	Enhancers	HUES6 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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