Variant report

Variant	rs12261209
Chromosome Location	chr10:93389343-93389344
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:93387435..93391591-chr10:93392416..93396501,4	K562	blood:
2	chr10:93389128..93391072-chr10:93391272..93395365,3	MCF-7	breast:
3	chr10:93383247..93385576-chr10:93389131..93391344,3	MCF-7	breast:
4	chr10:93387435..93390652-chr10:93392972..93396624,3	K562	blood:
5	chr10:93387981..93389630-chr10:93402010..93403622,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000119938	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11186631	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11186635	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];0.81[LWK][hapmap];1.00[MEX][hapmap];0.84[MKK][hapmap];1.00[TSI][hapmap];0.90[YRI][hapmap];0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1967844	1.00[ASN][1000 genomes]
rs61874551	1.00[ASN][1000 genomes]
rs61874552	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61874553	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61874554	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61874555	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61874557	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61876102	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61876105	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs61876108	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61876134	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61876136	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61876137	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61876138	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61876139	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6583778	0.83[ASN][1000 genomes]
rs7085998	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[GIH][hapmap];1.00[MEX][hapmap];0.92[TSI][hapmap];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:73 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93377400-93389600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr10:93385000-93391800	Weak transcription	NH-A	brain
3	chr10:93385000-93392400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr10:93386400-93392600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr10:93386600-93389400	Weak transcription	Adipose Nuclei	Adipose
6	chr10:93386800-93389600	Genic enhancers	Pancreas	Pancrea
7	chr10:93387000-93392600	Transcr. at gene 5' and 3'	Fetal Lung	lung
8	chr10:93387200-93391400	Transcr. at gene 5' and 3'	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr10:93387200-93391800	Weak transcription	Stomach Mucosa	stomach
10	chr10:93387600-93389400	Strong transcription	HSMM	muscle
11	chr10:93387600-93390400	Transcr. at gene 5' and 3'	Skeletal Muscle Female	skeletal muscle
12	chr10:93387600-93390600	Transcr. at gene 5' and 3'	Skeletal Muscle Male	skeletal muscle
13	chr10:93387600-93390600	Transcr. at gene 5' and 3'	Stomach Smooth Muscle	stomach
14	chr10:93387600-93390600	Genic enhancers	HepG2	liver
15	chr10:93387600-93391200	Transcr. at gene 5' and 3'	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr10:93387800-93390400	Transcr. at gene 5' and 3'	Liver	Liver
17	chr10:93387800-93390800	Transcr. at gene 5' and 3'	Fetal Muscle Leg	muscle
18	chr10:93387800-93391000	Transcr. at gene 5' and 3'	Colon Smooth Muscle	Colon
19	chr10:93387800-93392400	Weak transcription	Placenta	Placenta
20	chr10:93387800-93392600	Weak transcription	Spleen	Spleen
21	chr10:93388000-93389600	Weak transcription	Esophagus	oesophagus
22	chr10:93388000-93392200	Weak transcription	Gastric	stomach
23	chr10:93388000-93392600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr10:93388000-93393600	Active TSS	Right Atrium	heart
25	chr10:93388200-93389400	Active TSS	Brain Inferior Temporal Lobe	brain
26	chr10:93388200-93389600	Genic enhancers	Cortex derived primary cultured neurospheres	brain
27	chr10:93388200-93389600	Active TSS	Psoas Muscle	Psoas
28	chr10:93388200-93390200	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
29	chr10:93388200-93391000	Transcr. at gene 5' and 3'	Osteobl	bone
30	chr10:93388400-93389600	Active TSS	HSMMtube	muscle
31	chr10:93388400-93391000	Transcr. at gene 5' and 3'	Breast Myoepithelial Primary Cells	Breast
32	chr10:93388400-93391200	Transcr. at gene 5' and 3'	Muscle Satellite Cultured Cells	--
33	chr10:93388400-93391200	Transcr. at gene 5' and 3'	Foreskin Melanocyte Primary Cells skin03	Skin
34	chr10:93388400-93392600	ZNF genes & repeats	Fetal Heart	heart
35	chr10:93388600-93389600	Active TSS	Fetal Intestine Small	intestine
36	chr10:93388600-93389600	Active TSS	Rectal Mucosa Donor 29	rectum
37	chr10:93388600-93390200	Active TSS	Brain Cingulate Gyrus	brain
38	chr10:93388600-93390200	Transcr. at gene 5' and 3'	Fetal Kidney	kidney
39	chr10:93388600-93390800	Transcr. at gene 5' and 3'	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr10:93388600-93390800	Transcr. at gene 5' and 3'	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chr10:93388600-93390800	Transcr. at gene 5' and 3'	Ganglion Eminence derived primary cultured neurospheres	brain
42	chr10:93388600-93391000	Transcr. at gene 5' and 3'	Aorta	Aorta
43	chr10:93388600-93391000	Transcr. at gene 5' and 3'	Fetal Muscle Trunk	muscle
44	chr10:93388600-93391000	Transcr. at gene 5' and 3'	Left Ventricle	heart
45	chr10:93388600-93391200	Transcr. at gene 5' and 3'	IMR90 fetal lung fibroblasts Cell Line	lung
46	chr10:93388600-93391800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
47	chr10:93388600-93393600	Active TSS	Brain Angular Gyrus	brain
48	chr10:93388800-93389600	Active TSS	Fetal Stomach	stomach
49	chr10:93388800-93390400	Genic enhancers	NHEK	skin
50	chr10:93388800-93391000	Transcr. at gene 5' and 3'	Foreskin Fibroblast Primary Cells skin02	Skin

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