Variant report

Variant	rs17106868
Chromosome Location	chr10:93386671-93386672
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:93377962..93379937-chr10:93386628..93388397,2	MCF-7	breast:
2	chr10:93362065..93364214-chr10:93385412..93387121,2	MCF-7	breast:
3	chr10:93386300..93388872-chr10:93393581..93396543,2	MCF-7	breast:
4	chr10:93386594..93389041-chr10:93389303..93393326,7	MCF-7	breast:

Variant related genes	Relation type
ENSG00000119938	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10786006	0.85[ASN][1000 genomes]
rs10881931	0.85[ASN][1000 genomes]
rs11186630	0.85[ASN][1000 genomes]
rs11819558	0.96[ASN][1000 genomes]
rs11819574	0.96[ASN][1000 genomes]
rs12354606	0.85[ASN][1000 genomes]
rs17106864	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17106892	0.96[ASN][1000 genomes]
rs2242121	0.81[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs4477361	0.92[ASN][1000 genomes]
rs7069752	0.86[AMR][1000 genomes]
rs7071622	0.96[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73320191	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73322045	0.96[ASN][1000 genomes]
rs73323911	0.89[ASN][1000 genomes]
rs7907539	0.96[ASN][1000 genomes]
rs7915974	0.89[ASN][1000 genomes]

No data

Chromatin state (count:58 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93368000-93388600	Weak transcription	Brain Angular Gyrus	brain
2	chr10:93369000-93387600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr10:93369600-93387800	Weak transcription	Fetal Brain Male	brain
4	chr10:93371400-93386800	Weak transcription	Pancreas	Pancrea
5	chr10:93374000-93387000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr10:93377400-93386800	Weak transcription	Stomach Mucosa	stomach
7	chr10:93377400-93387600	Weak transcription	Esophagus	oesophagus
8	chr10:93377400-93387600	Weak transcription	HSMM	muscle
9	chr10:93377400-93387800	Weak transcription	Psoas Muscle	Psoas
10	chr10:93377400-93389600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr10:93377600-93387600	Weak transcription	NHEK	skin
12	chr10:93377600-93387800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr10:93377600-93388000	Weak transcription	HSMMtube	muscle
14	chr10:93377800-93387600	Weak transcription	Muscle Satellite Cultured Cells	--
15	chr10:93378600-93389000	Weak transcription	Hela-S3	cervix
16	chr10:93382000-93387600	Weak transcription	HepG2	liver
17	chr10:93382200-93387800	Weak transcription	Lung	lung
18	chr10:93382600-93387600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
19	chr10:93382800-93387600	Weak transcription	Brain Anterior Caudate	brain
20	chr10:93382800-93387600	Weak transcription	Colon Smooth Muscle	Colon
21	chr10:93382800-93388200	Weak transcription	Brain Inferior Temporal Lobe	brain
22	chr10:93383000-93388200	Weak transcription	Pancreatic Islets	Pancreatic Islet
23	chr10:93383000-93388600	Weak transcription	Brain Hippocampus Middle	brain
24	chr10:93383800-93387600	Weak transcription	Fetal Muscle Trunk	muscle
25	chr10:93383800-93387600	Weak transcription	Osteobl	bone
26	chr10:93383800-93388200	Strong transcription	Cortex derived primary cultured neurospheres	brain
27	chr10:93384000-93388600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr10:93384200-93386800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr10:93384200-93387600	Weak transcription	Rectal Smooth Muscle	rectum
30	chr10:93384800-93387600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr10:93385000-93387800	Weak transcription	NHLF	lung
32	chr10:93385000-93391800	Weak transcription	NH-A	brain
33	chr10:93385000-93392400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
34	chr10:93385200-93387000	Weak transcription	Duodenum Smooth Muscle	Duodenum
35	chr10:93385200-93387200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr10:93385200-93387800	Weak transcription	Right Ventricle	heart
37	chr10:93385200-93388000	Strong transcription	Fetal Intestine Small	intestine
38	chr10:93385400-93386800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr10:93385400-93386800	Weak transcription	Aorta	Aorta
40	chr10:93385400-93386800	Weak transcription	Fetal Muscle Leg	muscle
41	chr10:93385400-93386800	Weak transcription	Ovary	ovary
42	chr10:93385400-93389200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
43	chr10:93385600-93387000	Genic enhancers	Fetal Lung	lung
44	chr10:93385600-93387600	Genic enhancers	Fetal Stomach	stomach
45	chr10:93385600-93387800	Enhancers	NHDF-Ad	bronchial
46	chr10:93385600-93388600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
47	chr10:93386200-93387000	Enhancers	Left Ventricle	heart
48	chr10:93386200-93387200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
49	chr10:93386200-93387200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
50	chr10:93386200-93387400	Enhancers	Skeletal Muscle Male	skeletal muscle

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