Variant report

Variant	rs17107305
Chromosome Location	chr11:107537163-107537164
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1680251	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1790139	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1790140	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs525584	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs531608	0.80[AMR][1000 genomes]
rs561617	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs591697	1.00[EUR][1000 genomes]
rs595138	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs599271	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60752013	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs627021	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038368	chr11:107116577-107664181	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv541163	chr11:107116577-107664181	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
3	nsv533794	chr11:107349817-108093259	Bivalent Enhancer Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
4	nsv1039425	chr11:107468681-107895836	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
5	nsv427899	chr11:107471544-107805894	Weak transcription Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
6	nsv468866	chr11:107472733-107566585	Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv556377	chr11:107472733-107566585	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	esv2422201	chr11:107479362-107555825	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv1052198	chr11:107509918-107684371	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:107526800-107537200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr11:107534800-107542600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr11:107535400-107538200	Enhancers	Fetal Muscle Leg	muscle
4	chr11:107535400-107541400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr11:107535600-107539000	Weak transcription	Fetal Brain Male	brain
6	chr11:107536200-107537200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr11:107536200-107538200	Enhancers	HSMMtube	muscle
8	chr11:107536200-107539000	Weak transcription	Fetal Brain Female	brain
9	chr11:107536400-107537200	Weak transcription	Adipose Nuclei	Adipose
10	chr11:107536400-107537400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr11:107536400-107537800	Weak transcription	Cortex derived primary cultured neurospheres	brain
12	chr11:107536400-107539800	Weak transcription	HSMM	muscle
13	chr11:107537000-107537200	Enhancers	Brain Germinal Matrix	brain
14	chr11:107537000-107538200	Enhancers	H9 Cell Line	embryonic stem cell
15	chr11:107537000-107538200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
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