Variant report

Variant	rs60752013
Chromosome Location	chr11:107560967-107560968
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:107560069..107560995-chr11:107641497..107642096,3	MCF-7	breast:
2	chr11:107433924..107437606-chr11:107557431..107561019,4	MCF-7	breast:
3	chr11:106189939..106190500-chr11:107560120..107561021,2	K562	blood:

Variant related genes	Relation type
ENSG00000137760	Chromatin interaction

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs1680251	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17107305	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1790139	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1790140	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28716708	0.83[ASN][1000 genomes]
rs4448664	0.83[ASN][1000 genomes]
rs475875	0.80[ASN][1000 genomes]
rs477835	0.80[ASN][1000 genomes]
rs482353	0.83[ASN][1000 genomes]
rs486531	0.80[ASN][1000 genomes]
rs490626	0.82[ASN][1000 genomes]
rs498880	0.87[ASN][1000 genomes]
rs521030	0.81[ASN][1000 genomes]
rs525584	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs526291	0.80[ASN][1000 genomes]
rs527167	0.80[ASN][1000 genomes]
rs527296	0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs531608	0.87[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs550104	0.80[ASN][1000 genomes]
rs552215	0.80[ASN][1000 genomes]
rs561617	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs591697	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs595138	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs599271	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs607867	0.81[ASN][1000 genomes]
rs612205	0.80[ASN][1000 genomes]
rs627021	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs647756	0.80[ASN][1000 genomes]
rs654783	0.83[ASN][1000 genomes]
rs655594	0.83[ASN][1000 genomes]
rs669035	0.83[ASN][1000 genomes]
rs677782	0.80[ASN][1000 genomes]
rs694990	0.86[ASN][1000 genomes]
rs73557781	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038368	chr11:107116577-107664181	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv541163	chr11:107116577-107664181	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
3	nsv533794	chr11:107349817-108093259	Bivalent Enhancer Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
4	nsv1039425	chr11:107468681-107895836	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
5	nsv427899	chr11:107471544-107805894	Weak transcription Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
6	nsv468866	chr11:107472733-107566585	Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv556377	chr11:107472733-107566585	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	nsv1052198	chr11:107509918-107684371	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
9	nsv1049524	chr11:107540937-107954011	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
10	nsv1045492	chr11:107549167-107622778	Flanking Active TSS Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
11	nsv1043521	chr11:107559333-107628875	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:107559200-107562200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr11:107559400-107561200	Enhancers	Fetal Muscle Leg	muscle
3	chr11:107559400-107562600	Enhancers	Fetal Brain Male	brain
4	chr11:107559600-107561400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr11:107559600-107562400	Enhancers	Fetal Brain Female	brain
6	chr11:107560200-107562600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr11:107560400-107561600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr11:107560600-107561200	Enhancers	Fetal Muscle Trunk	muscle
9	chr11:107560600-107561400	Enhancers	NH-A	brain
10	chr11:107560600-107562000	Enhancers	Osteobl	bone
11	chr11:107560600-107562400	Enhancers	NHDF-Ad	bronchial
12	chr11:107560600-107562600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr11:107560600-107562600	Enhancers	Muscle Satellite Cultured Cells	--
14	chr11:107560800-107561200	Enhancers	Skeletal Muscle Female	skeletal muscle
15	chr11:107560800-107561400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr11:107560800-107562400	Weak transcription	A549	lung

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