Variant report

Variant	rs17107646
Chromosome Location	chr14:78922755-78922756
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1003364	1.00[CHB][hapmap]
rs10134094	1.00[CHB][hapmap]
rs10136661	1.00[CHB][hapmap]
rs12435130	1.00[CHB][hapmap]
rs17107684	1.00[CHB][hapmap]
rs17107794	1.00[CHB][hapmap]
rs2110422	1.00[CHB][hapmap]
rs2110423	1.00[CHB][hapmap]
rs2366098	1.00[CHB][hapmap]
rs4903764	1.00[CHB][hapmap]
rs6574445	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs717109	1.00[CHB][hapmap]
rs717110	1.00[CHB][hapmap]
rs8005130	1.00[CHB][hapmap]
rs8016031	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832837	chr14:78766805-78946526	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	esv2760000	chr14:78875607-79173528	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	esv2758363	chr14:78903610-79173528	Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:78907200-78928200	Weak transcription	Brain Germinal Matrix	brain
2	chr14:78919600-78923000	Enhancers	Brain Inferior Temporal Lobe	brain
3	chr14:78920800-78923000	Enhancers	Brain Angular Gyrus	brain
4	chr14:78922200-78922800	Flanking Active TSS	GM12878-XiMat	blood
5	chr14:78922400-78922800	Flanking Active TSS	Brain Hippocampus Middle	brain
6	chr14:78922400-78922800	Flanking Active TSS	Brain Substantia Nigra	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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