Variant report

Variant	rs10136661
Chromosome Location	chr14:78924209-78924210
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs1003364	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs10134094	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs10483901	0.90[CEU][hapmap];0.82[EUR][1000 genomes]
rs11159361	0.82[EUR][1000 genomes]
rs12435130	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs17107538	0.90[CEU][hapmap]
rs17107542	0.90[CEU][hapmap]
rs17107548	0.90[CEU][hapmap]
rs17107550	0.90[CEU][hapmap]
rs17107557	0.90[CEU][hapmap];0.86[EUR][1000 genomes]
rs17107581	0.90[CEU][hapmap];0.86[EUR][1000 genomes]
rs17107585	0.90[CEU][hapmap];0.86[EUR][1000 genomes]
rs17107591	0.90[CEU][hapmap];0.82[EUR][1000 genomes]
rs17107601	0.90[CEU][hapmap];0.80[EUR][1000 genomes]
rs17107609	0.90[CEU][hapmap];0.82[EUR][1000 genomes]
rs17107613	0.90[CEU][hapmap];0.82[EUR][1000 genomes]
rs17107646	1.00[CHB][hapmap]
rs17107684	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs17107794	1.00[CHB][hapmap]
rs2024332	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs2110419	0.90[CEU][hapmap];0.86[EUR][1000 genomes]
rs2110421	0.82[AMR][1000 genomes]
rs2110422	1.00[CHB][hapmap]
rs2110423	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2192412	0.90[CEU][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2366098	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs4903758	0.90[CEU][hapmap]
rs4903764	1.00[CHB][hapmap]
rs55979048	0.80[EUR][1000 genomes]
rs58059538	0.82[EUR][1000 genomes]
rs59095684	0.80[EUR][1000 genomes]
rs59408728	0.86[EUR][1000 genomes]
rs6574445	0.90[CEU][hapmap];1.00[CHB][hapmap];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6574446	0.90[CEU][hapmap];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs66537136	0.82[EUR][1000 genomes]
rs66994883	0.86[EUR][1000 genomes]
rs67217620	0.80[EUR][1000 genomes]
rs67267603	0.82[EUR][1000 genomes]
rs67546397	0.86[EUR][1000 genomes]
rs67985811	0.82[EUR][1000 genomes]
rs717109	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs717110	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs72681546	0.84[EUR][1000 genomes]
rs72681549	0.86[EUR][1000 genomes]
rs72681562	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73314796	0.86[EUR][1000 genomes]
rs8005130	1.00[CHB][hapmap]
rs8006094	0.90[CEU][hapmap];0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs8012198	0.90[CEU][hapmap];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs8013213	0.90[CEU][hapmap];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs8014352	0.90[CEU][hapmap];0.84[EUR][1000 genomes]
rs8014780	0.90[CEU][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8015539	0.90[CEU][hapmap];0.82[EUR][1000 genomes]
rs8015993	0.90[CEU][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8016031	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs8017625	0.90[CEU][hapmap]
rs8018020	0.90[CEU][hapmap];0.82[EUR][1000 genomes]
rs8020296	0.90[CEU][hapmap]
rs8020600	0.90[CEU][hapmap]
rs8020758	0.90[CEU][hapmap]
rs995265	0.90[CEU][hapmap];0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832837	chr14:78766805-78946526	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	esv2760000	chr14:78875607-79173528	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	esv2758363	chr14:78903610-79173528	Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:78907200-78928200	Weak transcription	Brain Germinal Matrix	brain
2	chr14:78924000-78925200	Enhancers	Adipose Nuclei	Adipose

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