Variant report

Variant	rs8012198
Chromosome Location	chr14:78920110-78920111
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10136661	0.90[CEU][hapmap];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10483901	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs11159361	0.81[EUR][1000 genomes]
rs17107538	1.00[CEU][hapmap]
rs17107542	1.00[CEU][hapmap]
rs17107548	1.00[CEU][hapmap]
rs17107550	1.00[CEU][hapmap]
rs17107557	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs17107573	0.81[CEU][hapmap]
rs17107581	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs17107585	0.90[CEU][hapmap];0.85[EUR][1000 genomes]
rs17107591	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs17107601	0.90[CEU][hapmap]
rs17107609	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs17107613	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs1861081	0.81[CEU][hapmap]
rs2024332	0.86[CEU][hapmap];0.81[EUR][1000 genomes]
rs2110419	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs2110421	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2110423	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2192412	1.00[CEU][hapmap];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4903758	1.00[CEU][hapmap]
rs58059538	0.81[EUR][1000 genomes]
rs59408728	0.85[EUR][1000 genomes]
rs6574445	1.00[CEU][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6574446	1.00[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs66537136	0.81[EUR][1000 genomes]
rs66994883	0.85[EUR][1000 genomes]
rs67267603	0.81[EUR][1000 genomes]
rs67546397	0.85[EUR][1000 genomes]
rs67985811	0.81[EUR][1000 genomes]
rs72681549	0.85[EUR][1000 genomes]
rs72681562	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73314796	0.85[EUR][1000 genomes]
rs8006094	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs8013213	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8014352	1.00[CEU][hapmap]
rs8014780	1.00[CEU][hapmap];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs8015539	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs8015993	1.00[CEU][hapmap];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs8017625	0.90[CEU][hapmap]
rs8018020	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs8020296	1.00[CEU][hapmap]
rs8020600	0.90[CEU][hapmap]
rs8020758	1.00[CEU][hapmap]
rs995265	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832837	chr14:78766805-78946526	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	esv2760000	chr14:78875607-79173528	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	esv2758363	chr14:78903610-79173528	Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:78907200-78928200	Weak transcription	Brain Germinal Matrix	brain
2	chr14:78915200-78921000	Weak transcription	Brain Anterior Caudate	brain
3	chr14:78917600-78922000	Weak transcription	GM12878-XiMat	blood
4	chr14:78918000-78921200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr14:78918800-78920200	Enhancers	Brain Substantia Nigra	brain
6	chr14:78918800-78922600	Enhancers	Brain Cingulate Gyrus	brain
7	chr14:78919400-78920400	Enhancers	Brain Hippocampus Middle	brain
8	chr14:78919600-78920200	Enhancers	Brain Angular Gyrus	brain
9	chr14:78919600-78923000	Enhancers	Brain Inferior Temporal Lobe	brain

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