Variant report

Variant	rs8015539
Chromosome Location	chr14:78906876-78906877
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 109 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:105)

rs_ID	r²[population]
rs10132376	1.00[CHB][hapmap]
rs10136661	0.90[CEU][hapmap];0.82[EUR][1000 genomes]
rs10138731	1.00[CHB][hapmap]
rs10140699	1.00[CHB][hapmap]
rs10141923	1.00[CHB][hapmap]
rs10483898	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs10483901	1.00[CEU][hapmap];0.94[MEX][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10873318	1.00[CHB][hapmap]
rs11159358	0.80[AMR][1000 genomes]
rs11159359	0.80[AMR][1000 genomes]
rs11159361	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12323467	1.00[CHB][hapmap]
rs12431997	1.00[CHB][hapmap]
rs12432145	1.00[CHB][hapmap]
rs12432323	1.00[CHB][hapmap]
rs12435491	1.00[CHB][hapmap]
rs12435510	1.00[CHB][hapmap]
rs12436134	1.00[CHB][hapmap]
rs12437077	1.00[CHB][hapmap]
rs12892370	0.88[MEX][hapmap];0.82[AMR][1000 genomes]
rs12893431	0.94[MEX][hapmap];0.81[MKK][hapmap];0.84[AMR][1000 genomes]
rs17107424	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17107444	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17107508	0.87[MEX][hapmap]
rs17107516	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs17107519	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs17107523	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs17107530	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs17107538	1.00[CEU][hapmap];0.94[MEX][hapmap];0.85[TSI][hapmap];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17107542	1.00[CEU][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17107548	1.00[CEU][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17107550	1.00[CEU][hapmap];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17107557	1.00[CEU][hapmap];0.88[MEX][hapmap];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17107573	0.81[CEU][hapmap]
rs17107581	1.00[CEU][hapmap];0.88[MEX][hapmap];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17107585	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17107591	1.00[CEU][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17107594	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17107601	1.00[CEU][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17107609	1.00[CEU][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17107611	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17107613	1.00[CEU][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17107847	1.00[CHB][hapmap]
rs1861081	0.81[CEU][hapmap]
rs2024332	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2110419	1.00[CEU][hapmap];0.88[MEX][hapmap];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2110423	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs2192412	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs35007217	0.84[AMR][1000 genomes]
rs35061087	0.84[AMR][1000 genomes]
rs35575369	0.94[MEX][hapmap];0.84[AMR][1000 genomes]
rs4903758	1.00[CEU][hapmap];0.94[MEX][hapmap];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs55905917	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs55960597	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs55979048	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs56063448	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs58059538	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs58330928	1.00[ASN][1000 genomes]
rs59095684	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs59408728	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs60195559	0.84[AMR][1000 genomes]
rs6574445	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs6574446	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs66485366	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs66537136	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs66607952	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs66647618	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs66994883	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs67217620	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs67254727	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs67267603	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs67546397	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs67985811	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs68180395	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7147592	1.00[CHB][hapmap]
rs72681532	0.84[AMR][1000 genomes]
rs72681546	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72681549	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72681562	0.82[EUR][1000 genomes]
rs732176	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs73314796	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73316040	0.80[ASN][1000 genomes]
rs73316042	0.80[ASN][1000 genomes]
rs73316045	0.80[ASN][1000 genomes]
rs73316436	1.00[ASN][1000 genomes]
rs73327195	0.80[ASN][1000 genomes]
rs73327200	0.80[ASN][1000 genomes]
rs73329110	0.86[ASN][1000 genomes]
rs73329120	0.86[ASN][1000 genomes]
rs73329172	1.00[ASN][1000 genomes]
rs8006094	1.00[CEU][hapmap]
rs8009964	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs8012198	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs8013213	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs8014352	1.00[CEU][hapmap];0.94[MEX][hapmap];0.83[TSI][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs8014780	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs8015993	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs8017625	1.00[CEU][hapmap];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs8018020	1.00[CEU][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8020296	1.00[CEU][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs8020600	1.00[CEU][hapmap];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs8020758	1.00[CEU][hapmap];0.94[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs8021104	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9323666	1.00[CHB][hapmap]
rs995265	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832837	chr14:78766805-78946526	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	esv2757577	chr14:78875607-78912967	Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	n/a
3	esv2760000	chr14:78875607-79173528	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	esv2758363	chr14:78903610-79173528	Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:78894400-78914600	Weak transcription	GM12878-XiMat	blood
2	chr14:78905800-78907600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr14:78906600-78907200	Enhancers	Brain Germinal Matrix	brain
4	chr14:78906600-78907400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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