Variant report

Variant	rs12892370
Chromosome Location	chr14:78875607-78875608
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:78868093..78870050-chr14:78874447..78876831,2	K562	blood:
2	chr14:78861659..78863872-chr14:78874003..78876017,2	K562	blood:

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10483901	0.82[MEX][hapmap]
rs11159358	0.90[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11159359	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12887878	0.82[AMR][1000 genomes]
rs12893431	1.00[CEU][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17107503	0.91[JPT][hapmap]
rs17107508	0.82[AMR][1000 genomes]
rs17107538	0.82[MEX][hapmap];0.87[TSI][hapmap]
rs17107542	0.82[MEX][hapmap]
rs17107548	0.82[MEX][hapmap]
rs17107557	1.00[CHB][hapmap];0.85[CHD][hapmap];0.90[JPT][hapmap];1.00[MEX][hapmap];0.93[YRI][hapmap];0.87[AMR][1000 genomes]
rs17107573	0.88[MEX][hapmap]
rs17107581	1.00[CHB][hapmap];0.85[CHD][hapmap];0.90[JPT][hapmap];1.00[MEX][hapmap];0.84[AMR][1000 genomes]
rs17107585	1.00[CHB][hapmap];0.90[JPT][hapmap];0.85[AMR][1000 genomes]
rs17107589	1.00[CHB][hapmap];0.90[JPT][hapmap]
rs17107601	0.85[CHB][hapmap];0.82[YRI][hapmap];0.85[AMR][1000 genomes]
rs1861081	0.89[MEX][hapmap]
rs2024332	0.85[CHB][hapmap];0.83[AMR][1000 genomes]
rs2110419	1.00[CHB][hapmap];0.85[CHD][hapmap];0.90[JPT][hapmap];0.80[LWK][hapmap];1.00[MEX][hapmap];0.93[YRI][hapmap];0.87[AMR][1000 genomes]
rs214023	0.83[CEU][hapmap]
rs214024	0.92[CEU][hapmap]
rs214026	0.92[CEU][hapmap]
rs214027	0.92[CEU][hapmap]
rs2215838	0.89[MEX][hapmap]
rs34598586	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs35007217	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs35061087	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs35575369	1.00[CEU][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4903758	1.00[CHB][hapmap];0.85[CHD][hapmap];0.90[JPT][hapmap];0.94[MEX][hapmap]
rs4903759	0.85[CHB][hapmap];0.90[JPT][hapmap]
rs58059538	0.87[AMR][1000 genomes]
rs59408728	0.87[AMR][1000 genomes]
rs60195559	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs66537136	0.85[AMR][1000 genomes]
rs66994883	0.87[AMR][1000 genomes]
rs67546397	0.82[AMR][1000 genomes]
rs72681532	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72681549	0.85[AMR][1000 genomes]
rs73314796	0.85[AMR][1000 genomes]
rs73327172	1.00[ASN][1000 genomes]
rs8014352	0.82[MEX][hapmap]
rs8015539	0.88[MEX][hapmap];0.82[AMR][1000 genomes]
rs8018020	0.82[MEX][hapmap]
rs8020296	0.82[MEX][hapmap]
rs8020758	0.82[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832837	chr14:78766805-78946526	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	esv2757577	chr14:78875607-78912967	Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	n/a
3	esv2760000	chr14:78875607-79173528	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:78873400-78880600	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr14:78873400-78881400	Weak transcription	Brain Anterior Caudate	brain
3	chr14:78873600-78876600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr14:78873600-78880600	Weak transcription	Brain Angular Gyrus	brain
5	chr14:78874200-78876600	Weak transcription	Brain Cingulate Gyrus	brain
6	chr14:78874200-78881000	Weak transcription	Brain Hippocampus Middle	brain
7	chr14:78875200-78878000	Weak transcription	GM12878-XiMat	blood

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