Variant report

Variant	rs12887878
Chromosome Location	chr14:78871093-78871094
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs12892370	0.82[AMR][1000 genomes]
rs12893431	0.92[AMR][1000 genomes]
rs17107508	1.00[CEU][hapmap];0.94[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17107591	0.81[YRI][hapmap]
rs34598586	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs34783487	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35007217	0.92[AMR][1000 genomes]
rs35575369	0.92[AMR][1000 genomes]
rs60195559	0.92[AMR][1000 genomes]
rs72681532	0.92[AMR][1000 genomes]
rs8014352	0.94[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832837	chr14:78766805-78946526	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:78865400-78871200	Weak transcription	Brain Anterior Caudate	brain
2	chr14:78869200-78872400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr14:78869400-78875000	Active TSS	GM12878-XiMat	blood
4	chr14:78869600-78871600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr14:78870200-78871200	Weak transcription	Brain Germinal Matrix	brain
6	chr14:78870600-78873000	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr14:78870600-78873400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr14:78871000-78872000	Weak transcription	Brain Angular Gyrus	brain
9	chr14:78871000-78872600	Weak transcription	Brain Cingulate Gyrus	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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