Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10483901	0.93[MEX][hapmap];0.83[YRI][hapmap]
rs12887878	1.00[CEU][hapmap];0.94[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12892370	0.82[AMR][1000 genomes]
rs12893431	0.90[ASW][hapmap];0.93[MEX][hapmap];0.83[YRI][hapmap];0.92[AMR][1000 genomes]
rs17107538	0.93[MEX][hapmap]
rs17107542	0.93[MEX][hapmap]
rs17107548	0.93[MEX][hapmap]
rs17107591	0.83[YRI][hapmap]
rs34598586	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs34783487	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35007217	0.92[AMR][1000 genomes]
rs35575369	0.90[ASW][hapmap];0.80[LWK][hapmap];0.93[MEX][hapmap];0.83[YRI][hapmap];0.92[AMR][1000 genomes]
rs4903758	0.82[MEX][hapmap]
rs60195559	0.92[AMR][1000 genomes]
rs72681532	0.92[AMR][1000 genomes]
rs8014352	0.81[LWK][hapmap];0.93[MEX][hapmap];0.81[MKK][hapmap];1.00[YRI][hapmap]
rs8015539	0.87[MEX][hapmap]
rs8018020	0.93[MEX][hapmap]
rs8020296	0.93[MEX][hapmap]
rs8020758	0.93[MEX][hapmap];0.83[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832837	chr14:78766805-78946526	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:78869400-78875000	Active TSS	GM12878-XiMat	blood
2	chr14:78870600-78873000	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr14:78870600-78873400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr14:78871000-78872600	Weak transcription	Brain Cingulate Gyrus	brain
5	chr14:78871200-78874400	Enhancers	Brain Substantia Nigra	brain
6	chr14:78871400-78873200	Weak transcription	Brain Hippocampus Middle	brain
7	chr14:78872000-78872600	Enhancers	Brain Angular Gyrus	brain
8	chr14:78872400-78872800	Weak transcription	Brain Anterior Caudate	brain

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