Variant report

Variant	rs34598586
Chromosome Location	chr14:78874209-78874210
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11159358	0.84[AMR][1000 genomes]
rs11159359	0.84[AMR][1000 genomes]
rs12887878	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12892370	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12893431	0.81[AMR][1000 genomes]
rs17107508	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs34783487	0.97[EUR][1000 genomes]
rs35007217	0.81[AMR][1000 genomes]
rs35061087	0.87[AMR][1000 genomes]
rs35575369	0.81[AMR][1000 genomes]
rs60195559	0.81[AMR][1000 genomes]
rs72681532	0.81[AMR][1000 genomes]
rs73327172	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832837	chr14:78766805-78946526	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:78869400-78875000	Active TSS	GM12878-XiMat	blood
2	chr14:78871200-78874400	Enhancers	Brain Substantia Nigra	brain
3	chr14:78873400-78880600	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr14:78873400-78881400	Weak transcription	Brain Anterior Caudate	brain
5	chr14:78873600-78876600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr14:78873600-78880600	Weak transcription	Brain Angular Gyrus	brain
7	chr14:78874200-78876600	Weak transcription	Brain Cingulate Gyrus	brain
8	chr14:78874200-78881000	Weak transcription	Brain Hippocampus Middle	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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