Variant report

Variant	rs11159358
Chromosome Location	chr14:78883360-78883361
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs11159359	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11159361	0.81[AMR][1000 genomes]
rs1124299	0.81[CEU][hapmap]
rs12892370	0.90[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12893431	0.90[CEU][hapmap];0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17107557	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs17107581	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs17107585	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs17107589	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs17107601	1.00[CHB][hapmap];0.84[AMR][1000 genomes]
rs2024332	0.86[AMR][1000 genomes]
rs2110419	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs214024	0.81[CEU][hapmap]
rs214026	0.81[CEU][hapmap]
rs214027	0.81[CEU][hapmap]
rs34598586	0.84[AMR][1000 genomes]
rs35007217	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs35061087	0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35575369	0.90[CEU][hapmap];0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4903758	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes]
rs4903759	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs58059538	0.89[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs59095684	0.82[AMR][1000 genomes]
rs59408728	0.89[AMR][1000 genomes]
rs60195559	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs66537136	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs66994883	0.89[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs67546397	0.87[AMR][1000 genomes]
rs72681532	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72681549	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs73311806	0.83[ASN][1000 genomes]
rs73314796	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs73316405	0.83[ASN][1000 genomes]
rs73329122	1.00[ASN][1000 genomes]
rs8015539	0.80[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832837	chr14:78766805-78946526	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	esv2757577	chr14:78875607-78912967	Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	n/a
3	esv2760000	chr14:78875607-79173528	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:78882000-78884200	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr14:78882400-78888000	Weak transcription	Brain Germinal Matrix	brain
3	chr14:78883200-78884000	Enhancers	GM12878-XiMat	blood

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