Variant report

Variant	rs214026
Chromosome Location	chr14:78814523-78814524
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs11159354	0.83[JPT][hapmap]
rs11159358	0.81[CEU][hapmap]
rs12887245	0.90[CHB][hapmap]
rs12892370	0.92[CEU][hapmap]
rs12893431	0.92[CEU][hapmap]
rs17107482	0.90[CHB][hapmap]
rs191940	0.96[JPT][hapmap];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs214003	0.80[AMR][1000 genomes]
rs214006	0.96[JPT][hapmap];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs214007	0.83[CEU][hapmap];0.82[JPT][hapmap];0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs214008	0.95[JPT][hapmap];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs214010	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs214011	0.95[JPT][hapmap];0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs214012	0.96[JPT][hapmap];0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs214013	0.96[JPT][hapmap];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs214014	0.95[JPT][hapmap];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs214017	0.82[JPT][hapmap];0.87[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs214018	0.95[JPT][hapmap];0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs214019	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs214020	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs214021	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs214022	0.87[AMR][1000 genomes]
rs214023	0.92[CEU][hapmap];0.95[JPT][hapmap];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs214024	1.00[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];0.86[YRI][hapmap];0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs214027	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2192420	0.85[CHB][hapmap]
rs2366155	0.85[CHB][hapmap]
rs35575369	0.92[CEU][hapmap]
rs7155022	0.85[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832837	chr14:78766805-78946526	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:78813800-78814600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr14:78813800-78815000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
3	chr14:78813800-78820200	Weak transcription	Brain Germinal Matrix	brain
4	chr14:78814200-78814600	Enhancers	H9 Cell Line	embryonic stem cell
5	chr14:78814200-78815000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr14:78814400-78814800	Enhancers	HUES48 Cell Line	embryonic stem cell

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