Variant report

Variant	rs17107482
Chromosome Location	chr14:78857639-78857640
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs12887245	0.95[CHB][hapmap]
rs17107429	1.00[CEU][hapmap]
rs17107436	0.88[CEU][hapmap]
rs17107446	0.88[CEU][hapmap]
rs214024	0.81[CHB][hapmap]
rs214026	0.90[CHB][hapmap]
rs214027	0.90[CHB][hapmap]
rs214028	0.88[CEU][hapmap]
rs214029	0.88[CEU][hapmap]
rs214030	0.88[CEU][hapmap]
rs214031	0.88[CEU][hapmap]
rs2192420	1.00[CEU][hapmap];0.95[CHB][hapmap];0.92[CHD][hapmap];0.80[JPT][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2215835	0.88[CEU][hapmap]
rs2215836	0.88[CEU][hapmap]
rs2366155	0.85[CHB][hapmap];0.94[JPT][hapmap]
rs66542227	0.81[ASN][1000 genomes]
rs7155022	0.85[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832837	chr14:78766805-78946526	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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