Variant report

Variant	rs17107429
Chromosome Location	chr14:78816091-78816092
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10140699	0.87[CEU][hapmap]
rs10483898	1.00[MEX][hapmap]
rs11851070	0.87[CEU][hapmap]
rs12435130	0.87[CEU][hapmap]
rs12435691	0.87[CEU][hapmap]
rs12436458	0.87[CEU][hapmap]
rs12892860	0.87[CEU][hapmap]
rs17107424	1.00[YRI][hapmap]
rs17107436	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs17107444	1.00[YRI][hapmap]
rs17107446	1.00[CEU][hapmap];0.93[CHD][hapmap];0.97[EUR][1000 genomes]
rs17107482	1.00[CEU][hapmap]
rs17107523	1.00[MEX][hapmap]
rs17107530	1.00[MEX][hapmap]
rs17107594	1.00[MEX][hapmap]
rs17107725	0.87[CEU][hapmap]
rs2052201	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs214028	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs214029	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs214030	1.00[CEU][hapmap];0.93[CHD][hapmap];0.97[EUR][1000 genomes]
rs214031	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs2192416	0.87[CEU][hapmap]
rs2192420	1.00[CEU][hapmap]
rs2215835	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2215836	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4384537	0.93[CHD][hapmap]
rs4903753	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6574438	1.00[CHB][hapmap];1.00[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7147592	0.87[CEU][hapmap]
rs7152492	0.87[CEU][hapmap]
rs73316006	0.82[EUR][1000 genomes]
rs73327202	0.91[EUR][1000 genomes]
rs8009240	0.84[EUR][1000 genomes]
rs887895	0.87[CHD][hapmap]
rs976330	1.00[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832837	chr14:78766805-78946526	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:78813800-78820200	Weak transcription	Brain Germinal Matrix	brain
2	chr14:78814600-78825600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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