Variant report

Variant	rs17107530
Chromosome Location	chr14:78884455-78884456
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10132376	1.00[CHB][hapmap]
rs10138731	1.00[CHB][hapmap]
rs10140699	1.00[CHB][hapmap]
rs10141923	1.00[CHB][hapmap]
rs10483898	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap]
rs10873318	1.00[CHB][hapmap]
rs12323467	1.00[CHB][hapmap]
rs12431997	1.00[CHB][hapmap]
rs12432145	1.00[CHB][hapmap]
rs12432323	1.00[CHB][hapmap]
rs12435491	1.00[CHB][hapmap]
rs12435510	1.00[CHB][hapmap]
rs12436134	1.00[CHB][hapmap]
rs12437077	1.00[CHB][hapmap]
rs17107424	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17107429	1.00[MEX][hapmap]
rs17107444	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17107516	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs17107519	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs17107523	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs17107594	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs17107601	1.00[JPT][hapmap]
rs17107611	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs17107847	1.00[CHB][hapmap]
rs56923572	1.00[AMR][1000 genomes]
rs58330928	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs59762056	1.00[AMR][1000 genomes]
rs59819728	1.00[AMR][1000 genomes]
rs61052532	1.00[AMR][1000 genomes]
rs7147592	1.00[CHB][hapmap]
rs732176	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs73316006	0.87[ASN][1000 genomes]
rs73316040	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs73316042	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs73316045	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs73316421	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73316436	1.00[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs73316456	1.00[AMR][1000 genomes]
rs73316459	1.00[AMR][1000 genomes]
rs73316471	1.00[AMR][1000 genomes]
rs73316478	1.00[AMR][1000 genomes]
rs73320490	1.00[AMR][1000 genomes]
rs73320491	1.00[AMR][1000 genomes]
rs73324490	1.00[AMR][1000 genomes]
rs73327195	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs73327200	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs73329110	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73329120	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73329172	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs8015539	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs9323666	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832837	chr14:78766805-78946526	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	esv2757577	chr14:78875607-78912967	Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	n/a
3	esv2760000	chr14:78875607-79173528	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:78882400-78888000	Weak transcription	Brain Germinal Matrix	brain
2	chr14:78884400-78884600	Enhancers	GM12878-XiMat	blood

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