Variant report

Variant	rs73316436
Chromosome Location	chr14:78922987-78922988
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs17107516	1.00[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs17107519	1.00[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs17107523	1.00[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs17107530	1.00[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs17107594	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17107611	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs56923572	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58330928	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs59762056	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59819728	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61052532	1.00[AMR][1000 genomes]
rs73316040	1.00[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs73316042	1.00[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs73316045	1.00[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs73316421	1.00[AMR][1000 genomes]
rs73316456	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73316459	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73316471	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73316478	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73320490	1.00[AMR][1000 genomes]
rs73320491	1.00[AMR][1000 genomes]
rs73324490	1.00[AMR][1000 genomes]
rs73327195	1.00[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs73327200	1.00[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs73329110	1.00[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs73329120	1.00[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs73329172	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs8015539	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832837	chr14:78766805-78946526	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	esv2760000	chr14:78875607-79173528	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	esv2758363	chr14:78903610-79173528	Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:78907200-78928200	Weak transcription	Brain Germinal Matrix	brain
2	chr14:78919600-78923000	Enhancers	Brain Inferior Temporal Lobe	brain
3	chr14:78920800-78923000	Enhancers	Brain Angular Gyrus	brain
4	chr14:78922800-78923000	Enhancers	Brain Hippocampus Middle	brain
5	chr14:78922800-78923000	Enhancers	Brain Substantia Nigra	brain
6	chr14:78922800-78923000	Enhancers	GM12878-XiMat	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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