Variant report

Variant	rs73329110
Chromosome Location	chr14:78881162-78881163
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs17107516	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs17107519	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs17107523	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs17107530	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17107594	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs17107611	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs56923572	1.00[AMR][1000 genomes]
rs58330928	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs59762056	1.00[AMR][1000 genomes]
rs59819728	1.00[AMR][1000 genomes]
rs61052532	1.00[AMR][1000 genomes]
rs73316006	0.87[ASN][1000 genomes]
rs73316040	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs73316042	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs73316045	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs73316421	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73316436	1.00[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs73316456	1.00[AMR][1000 genomes]
rs73316459	1.00[AMR][1000 genomes]
rs73316471	1.00[AMR][1000 genomes]
rs73316478	1.00[AMR][1000 genomes]
rs73320490	1.00[AMR][1000 genomes]
rs73320491	1.00[AMR][1000 genomes]
rs73324490	1.00[AMR][1000 genomes]
rs73327195	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs73327200	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs73329120	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73329172	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs8015539	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832837	chr14:78766805-78946526	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	esv2757577	chr14:78875607-78912967	Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	n/a
3	esv2760000	chr14:78875607-79173528	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:78873400-78881400	Weak transcription	Brain Anterior Caudate	brain
2	chr14:78879200-78883000	Weak transcription	GM12878-XiMat	blood
3	chr14:78880600-78881200	Enhancers	Brain Angular Gyrus	brain
4	chr14:78880600-78882400	Enhancers	Brain Germinal Matrix	brain
5	chr14:78880800-78881200	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr14:78881000-78881200	Enhancers	Brain Hippocampus Middle	brain

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