Variant report
| Variant | rs73316006 |
|---|---|
| Chromosome Location | chr14:78864926-78864927 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:1)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:1 , 50 per page) page:
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| No data |
| No data |
| No data |
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| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000239163 | TF binding region |
rSNPs within LD-proxies of this variant (count:32)
| rs_ID | r2[population] |
|---|---|
| rs17107424 | 0.88[ASN][1000 genomes] |
| rs17107429 | 0.82[EUR][1000 genomes] |
| rs17107436 | 0.85[EUR][1000 genomes] |
| rs17107444 | 0.88[ASN][1000 genomes] |
| rs17107446 | 0.85[EUR][1000 genomes] |
| rs17107516 | 0.94[ASN][1000 genomes] |
| rs17107519 | 0.94[ASN][1000 genomes] |
| rs17107523 | 0.94[ASN][1000 genomes] |
| rs17107530 | 0.87[ASN][1000 genomes] |
| rs214016 | 0.85[EUR][1000 genomes] |
| rs214028 | 0.85[EUR][1000 genomes] |
| rs214029 | 0.82[EUR][1000 genomes] |
| rs214030 | 0.85[EUR][1000 genomes] |
| rs214031 | 0.85[EUR][1000 genomes] |
| rs61199699 | 0.88[ASN][1000 genomes] |
| rs73308947 | 0.88[ASN][1000 genomes] |
| rs73308971 | 0.88[ASN][1000 genomes] |
| rs73308985 | 0.88[ASN][1000 genomes] |
| rs73309000 | 0.88[ASN][1000 genomes] |
| rs73310817 | 0.88[ASN][1000 genomes] |
| rs73310826 | 0.88[ASN][1000 genomes] |
| rs73316040 | 0.94[ASN][1000 genomes] |
| rs73316042 | 0.94[ASN][1000 genomes] |
| rs73316045 | 0.94[ASN][1000 genomes] |
| rs73319533 | 0.88[ASN][1000 genomes] |
| rs73319535 | 0.88[ASN][1000 genomes] |
| rs73319540 | 0.88[ASN][1000 genomes] |
| rs73327195 | 0.94[ASN][1000 genomes] |
| rs73327200 | 0.94[ASN][1000 genomes] |
| rs73327202 | 0.91[EUR][1000 genomes] |
| rs73329110 | 0.87[ASN][1000 genomes] |
| rs73329120 | 0.87[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv832837 | chr14:78766805-78946526 | Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr14:78864600-78866200 | Enhancers | Brain Germinal Matrix | brain |
| 2 | chr14:78864800-78865000 | Enhancers | Brain Angular Gyrus | brain |
