Variant report

Variant	rs214016
Chromosome Location	chr14:78811434-78811435
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10140699	0.85[CEU][hapmap]
rs11851070	0.85[CEU][hapmap]
rs12435130	0.85[CEU][hapmap]
rs12435691	0.85[CEU][hapmap]
rs12436458	0.85[CEU][hapmap]
rs12892860	0.85[CEU][hapmap]
rs17107436	0.81[EUR][1000 genomes]
rs17107446	0.81[EUR][1000 genomes]
rs17107725	0.85[CEU][hapmap]
rs214028	0.81[EUR][1000 genomes]
rs214030	0.81[EUR][1000 genomes]
rs214031	0.81[EUR][1000 genomes]
rs2192416	0.85[CEU][hapmap]
rs7152492	0.85[CEU][hapmap]
rs73316006	0.85[EUR][1000 genomes]
rs73327202	0.81[EUR][1000 genomes]
rs8009240	1.00[CEU][hapmap];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832837	chr14:78766805-78946526	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:78810200-78812000	Enhancers	Fetal Brain Female	brain
2	chr14:78810200-78813800	Enhancers	Brain Germinal Matrix	brain
3	chr14:78810400-78811600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr14:78810400-78814400	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr14:78810600-78811600	Enhancers	Fetal Brain Male	brain
6	chr14:78810800-78813000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr14:78810800-78814400	Enhancers	Fetal Intestine Small	intestine
8	chr14:78811200-78811600	Enhancers	Duodenum Mucosa	Duodenum

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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