Variant report

Variant	rs8009240
Chromosome Location	chr14:78805174-78805175
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10140699	0.85[CEU][hapmap]
rs11851070	0.85[CEU][hapmap]
rs12435130	0.85[CEU][hapmap]
rs12435691	0.85[CEU][hapmap]
rs12436458	0.85[CEU][hapmap]
rs12892860	0.85[CEU][hapmap]
rs17107429	0.84[EUR][1000 genomes]
rs17107436	0.87[EUR][1000 genomes]
rs17107446	0.87[EUR][1000 genomes]
rs17107725	0.85[CEU][hapmap]
rs214016	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs214028	0.87[EUR][1000 genomes]
rs214029	0.84[EUR][1000 genomes]
rs214030	0.87[EUR][1000 genomes]
rs214031	0.87[EUR][1000 genomes]
rs2192416	0.85[CEU][hapmap]
rs7152492	0.85[CEU][hapmap]
rs73327202	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832837	chr14:78766805-78946526	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv1054051	chr14:78772614-78805311	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:78798000-78807400	Weak transcription	Brain Germinal Matrix	brain
2	chr14:78802200-78810000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links