Variant report

Variant	rs12892860
Chromosome Location	chr14:78949321-78949322
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:78948422..78950339-chr14:78950508..78953460,2	K562	blood:

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10129570	1.00[CEU][hapmap]
rs10134028	1.00[CEU][hapmap]
rs10140699	1.00[CEU][hapmap]
rs11851070	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs12434281	1.00[CEU][hapmap]
rs12435130	1.00[CEU][hapmap]
rs12435691	1.00[CEU][hapmap]
rs12436458	1.00[CEU][hapmap]
rs12894903	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17107429	0.87[CEU][hapmap]
rs17107446	0.87[CEU][hapmap]
rs17107614	0.95[CHB][hapmap];0.84[JPT][hapmap]
rs17107634	0.95[CHB][hapmap];0.90[JPT][hapmap];0.88[ASN][1000 genomes]
rs17107659	0.90[CHB][hapmap];0.94[JPT][hapmap];0.89[ASN][1000 genomes]
rs17107714	0.91[CHB][hapmap];0.95[JPT][hapmap];0.99[ASN][1000 genomes]
rs17107723	0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[ASN][1000 genomes]
rs17107725	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.83[YRI][hapmap];0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17107729	0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[ASN][1000 genomes]
rs17107749	0.95[CHB][hapmap];0.94[JPT][hapmap];0.80[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs17107847	0.85[CEU][hapmap]
rs214016	0.85[CEU][hapmap]
rs214030	0.87[CEU][hapmap]
rs2192416	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs4899713	0.95[CHB][hapmap];0.94[JPT][hapmap];1.00[ASN][1000 genomes]
rs7147592	1.00[CEU][hapmap]
rs7152492	1.00[CEU][hapmap]
rs7153946	0.92[ASN][1000 genomes]
rs7157669	0.81[CHB][hapmap];0.94[JPT][hapmap]
rs724373	0.95[CHB][hapmap];0.83[JPT][hapmap];0.91[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73316490	0.80[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8007529	0.90[CHB][hapmap];0.84[JPT][hapmap]
rs8009240	0.85[CEU][hapmap]
rs8012913	0.86[CHB][hapmap]
rs8017143	0.95[CHB][hapmap];0.89[JPT][hapmap];0.95[ASN][1000 genomes]
rs9323666	1.00[CEU][hapmap]
rs995266	0.95[CHB][hapmap];0.89[JPT][hapmap];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2760000	chr14:78875607-79173528	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	esv2758363	chr14:78903610-79173528	Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:78942800-78950600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr14:78946000-78950600	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr14:78946200-78951600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr14:78948600-78949400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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