Variant report

Variant	rs724373
Chromosome Location	chr14:78942898-78942899
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11851070	0.95[EUR][1000 genomes]
rs12892860	0.95[CHB][hapmap];0.83[JPT][hapmap];0.91[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12894903	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17107614	1.00[CHB][hapmap]
rs17107634	1.00[CHB][hapmap];0.84[JPT][hapmap];0.88[ASN][1000 genomes]
rs17107653	0.82[CHB][hapmap]
rs17107659	0.95[CHB][hapmap];0.89[JPT][hapmap];0.89[ASN][1000 genomes]
rs17107714	0.95[CHB][hapmap];0.89[JPT][hapmap];0.99[ASN][1000 genomes]
rs17107723	1.00[CHB][hapmap];0.89[JPT][hapmap];1.00[ASN][1000 genomes]
rs17107725	1.00[CHB][hapmap];0.89[JPT][hapmap];0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17107729	1.00[CHB][hapmap];0.89[JPT][hapmap];1.00[ASN][1000 genomes]
rs17107749	1.00[CHB][hapmap];0.95[CHD][hapmap];0.89[JPT][hapmap];0.94[MKK][hapmap];0.80[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs2192416	0.82[TSI][hapmap];0.91[EUR][1000 genomes]
rs2366155	0.81[CHB][hapmap]
rs4899713	1.00[CHB][hapmap];0.95[CHD][hapmap];0.89[JPT][hapmap];1.00[ASN][1000 genomes]
rs7153946	0.92[ASN][1000 genomes]
rs7155022	0.81[CHB][hapmap]
rs7157669	0.86[CHB][hapmap];0.89[JPT][hapmap]
rs73316490	0.80[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8007529	0.95[CHB][hapmap]
rs8012913	0.91[CHB][hapmap]
rs8017143	1.00[CHB][hapmap];0.83[JPT][hapmap];0.95[ASN][1000 genomes]
rs995266	1.00[CHB][hapmap];0.83[CHD][hapmap];0.84[JPT][hapmap];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832837	chr14:78766805-78946526	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	esv2760000	chr14:78875607-79173528	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	esv2758363	chr14:78903610-79173528	Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:78942800-78950600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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