Variant report

No.	Distal block	Cell Line	Cell type
1	chr14:78914156..78915026-chr14:79163475..79164182,2	MCF-7	breast:
2	chr14:78914531..78915468-chr14:79064111..79065003,2	MCF-7	breast:
3	chr14:78914531..78915483-chr14:79064396..79065027,4	MCF-7	breast:
4	chr14:78914552..78915389-chr14:79032436..79033359,2	K562	blood:

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs12892860	0.95[CHB][hapmap];0.84[JPT][hapmap]
rs17107535	0.88[EUR][1000 genomes]
rs17107634	1.00[CHB][hapmap];0.94[JPT][hapmap]
rs17107653	0.82[CHB][hapmap]
rs17107659	0.95[CHB][hapmap];0.89[JPT][hapmap]
rs17107714	1.00[CHB][hapmap];0.89[JPT][hapmap]
rs17107723	1.00[CHB][hapmap];0.89[JPT][hapmap]
rs17107725	1.00[CHB][hapmap];0.89[JPT][hapmap]
rs17107729	1.00[CHB][hapmap];0.89[JPT][hapmap]
rs17107749	1.00[CHB][hapmap];0.89[JPT][hapmap]
rs1861080	0.93[EUR][1000 genomes]
rs2366155	0.81[CHB][hapmap]
rs4899713	1.00[CHB][hapmap];0.89[JPT][hapmap]
rs7155022	0.81[CHB][hapmap]
rs7157669	0.86[CHB][hapmap];0.89[JPT][hapmap]
rs724373	1.00[CHB][hapmap]
rs8007529	0.95[CHB][hapmap];1.00[GIH][hapmap];0.90[JPT][hapmap];0.91[TSI][hapmap];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs8012913	1.00[ASW][hapmap];1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[GIH][hapmap];0.80[JPT][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs8017143	1.00[CHB][hapmap];0.84[JPT][hapmap]
rs995266	1.00[CHB][hapmap];0.94[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832837	chr14:78766805-78946526	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	esv2760000	chr14:78875607-79173528	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	esv2758363	chr14:78903610-79173528	Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs17107614	SNW1	cis	occipital cortex	BrainEAC

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:78907200-78928200	Weak transcription	Brain Germinal Matrix	brain
2	chr14:78914600-78914800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
3	chr14:78914600-78915000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
4	chr14:78914600-78915000	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr14:78914600-78915000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr14:78914600-78915200	Enhancers	Brain Anterior Caudate	brain
7	chr14:78914600-78915200	Active TSS	GM12878-XiMat	blood

Quick Search: