Variant report

Variant	rs17107749
Chromosome Location	chr14:78951819-78951820
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:78948422..78950339-chr14:78950508..78953460,2	K562	blood:

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs12892860	0.95[CHB][hapmap];0.94[JPT][hapmap];0.80[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12894903	0.98[ASN][1000 genomes]
rs17107614	1.00[CHB][hapmap];0.89[JPT][hapmap]
rs17107634	1.00[CHB][hapmap];0.94[JPT][hapmap];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17107653	0.82[CHB][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs17107659	0.95[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17107714	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17107723	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17107725	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs17107729	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2366155	0.81[CHB][hapmap]
rs4899713	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4899715	0.83[EUR][1000 genomes]
rs7153946	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7155022	0.81[CHB][hapmap]
rs7157669	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs724373	1.00[CHB][hapmap];0.95[CHD][hapmap];0.89[JPT][hapmap];0.94[MKK][hapmap];0.80[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73316490	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs8007529	0.95[CHB][hapmap];0.90[JPT][hapmap]
rs8012913	0.91[CHB][hapmap];0.80[JPT][hapmap]
rs8017143	1.00[CHB][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];0.95[ASN][1000 genomes]
rs995266	1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2760000	chr14:78875607-79173528	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	esv2758363	chr14:78903610-79173528	Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:78950200-78955400	Weak transcription	Brain Angular Gyrus	brain
2	chr14:78950600-78953000	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr14:78950600-78953200	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr14:78950800-78953200	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr14:78951200-78952400	Enhancers	iPS-20b Cell Line	embryonic stem cell
6	chr14:78951200-78952800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr14:78951400-78953000	Enhancers	Duodenum Mucosa	Duodenum
8	chr14:78951600-78952600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr14:78951600-78952800	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chr14:78951600-78953000	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr14:78951800-78952400	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr14:78951800-78952800	Enhancers	iPS-15b Cell Line	embryonic stem cell
13	chr14:78951800-78953000	Weak transcription	Small Intestine	intestine
14	chr14:78951800-78956800	Weak transcription	Brain Germinal Matrix	brain

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