Variant report

Variant	rs8012913
Chromosome Location	chr14:78906094-78906095
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs12892860	0.86[CHB][hapmap]
rs17107535	0.88[EUR][1000 genomes]
rs17107614	1.00[ASW][hapmap];1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[GIH][hapmap];0.80[JPT][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17107634	0.91[CHB][hapmap]
rs17107653	0.91[CHB][hapmap]
rs17107659	0.95[CHB][hapmap];0.80[JPT][hapmap]
rs17107714	0.91[CHB][hapmap];0.80[JPT][hapmap]
rs17107723	0.91[CHB][hapmap];0.80[JPT][hapmap]
rs17107725	0.91[CHB][hapmap];0.80[JPT][hapmap]
rs17107729	0.91[CHB][hapmap];0.80[JPT][hapmap]
rs17107749	0.91[CHB][hapmap];0.80[JPT][hapmap]
rs1861080	0.93[EUR][1000 genomes]
rs4899713	0.91[CHB][hapmap];0.80[JPT][hapmap]
rs7157669	0.86[CHB][hapmap];0.80[JPT][hapmap]
rs724373	0.91[CHB][hapmap]
rs8007529	0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.91[TSI][hapmap];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8017143	0.91[CHB][hapmap]
rs995266	0.91[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832837	chr14:78766805-78946526	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	esv2757577	chr14:78875607-78912967	Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	n/a
3	esv2760000	chr14:78875607-79173528	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	esv2758363	chr14:78903610-79173528	Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:78894400-78914600	Weak transcription	GM12878-XiMat	blood
2	chr14:78905600-78906600	Weak transcription	Brain Germinal Matrix	brain
3	chr14:78905800-78907600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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