Variant report

Variant	rs17107653
Chromosome Location	chr14:78927171-78927172
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11851070	0.81[JPT][hapmap]
rs17107614	0.82[CHB][hapmap]
rs17107634	0.82[CHB][hapmap];0.90[EUR][1000 genomes]
rs17107659	1.00[ASW][hapmap];0.87[CHB][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17107714	0.82[CHB][hapmap];1.00[YRI][hapmap];0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17107723	0.82[CHB][hapmap];1.00[EUR][1000 genomes]
rs17107725	0.82[CHB][hapmap]
rs17107729	0.82[CHB][hapmap]
rs17107749	0.82[CHB][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs2192416	0.81[JPT][hapmap]
rs4899713	0.82[CHB][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs4899715	0.81[JPT][hapmap];0.83[EUR][1000 genomes]
rs7153946	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs724373	0.82[CHB][hapmap]
rs8007529	0.87[CHB][hapmap]
rs8012913	0.91[CHB][hapmap]
rs8017143	0.82[CHB][hapmap];1.00[MEX][hapmap]
rs995266	0.82[CHB][hapmap];1.00[MEX][hapmap];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832837	chr14:78766805-78946526	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	esv2760000	chr14:78875607-79173528	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	esv2758363	chr14:78903610-79173528	Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:78907200-78928200	Weak transcription	Brain Germinal Matrix	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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