Variant report

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10129570	1.00[CEU][hapmap]
rs10134028	1.00[CEU][hapmap]
rs10140699	1.00[CEU][hapmap]
rs1124299	0.91[CHB][hapmap]
rs11851331	0.82[YRI][hapmap]
rs12434281	1.00[CEU][hapmap]
rs12435130	1.00[CEU][hapmap]
rs12435691	1.00[CEU][hapmap]
rs12436458	1.00[CEU][hapmap]
rs12892860	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs12894903	0.95[EUR][1000 genomes]
rs17107429	0.87[CEU][hapmap]
rs17107446	0.87[CEU][hapmap]
rs17107534	0.87[CHB][hapmap]
rs17107535	0.86[CHB][hapmap]
rs17107573	0.95[CHB][hapmap];0.86[JPT][hapmap]
rs17107653	0.81[JPT][hapmap]
rs17107725	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs17107847	0.85[CEU][hapmap]
rs1861081	0.91[CHB][hapmap];0.86[JPT][hapmap]
rs2110420	0.87[CHB][hapmap]
rs2110421	0.83[ASN][1000 genomes]
rs214016	0.85[CEU][hapmap]
rs214030	0.87[CEU][hapmap]
rs2192416	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2215838	0.91[CHB][hapmap];0.81[JPT][hapmap]
rs4899715	0.84[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs7147592	1.00[CEU][hapmap]
rs7152492	1.00[CEU][hapmap]
rs724373	0.95[EUR][1000 genomes]
rs73316490	0.95[EUR][1000 genomes]
rs8006094	0.83[CHB][hapmap]
rs8009240	0.85[CEU][hapmap]
rs9323666	1.00[CEU][hapmap]
rs995265	0.91[CHB][hapmap];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832837	chr14:78766805-78946526	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	esv2760000	chr14:78875607-79173528	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	esv2758363	chr14:78903610-79173528	Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:78942000-78942800	Enhancers	H1 Cell Line	embryonic stem cell
2	chr14:78942000-78942800	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr14:78942000-78942800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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