Variant report
| Variant | rs10129570 |
|---|---|
| Chromosome Location | chr14:79008822-79008823 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:26)
| rs_ID | r2[population] |
|---|---|
| rs10134028 | 1.00[CEU][hapmap] |
| rs10140699 | 1.00[CEU][hapmap];1.00[JPT][hapmap] |
| rs11851070 | 1.00[CEU][hapmap] |
| rs12434281 | 1.00[CEU][hapmap] |
| rs12435130 | 1.00[CEU][hapmap];0.91[EUR][1000 genomes] |
| rs12435691 | 1.00[CEU][hapmap];1.00[EUR][1000 genomes] |
| rs12436458 | 1.00[CEU][hapmap] |
| rs12892860 | 1.00[CEU][hapmap] |
| rs17107725 | 1.00[CEU][hapmap] |
| rs17107847 | 1.00[JPT][hapmap] |
| rs2192416 | 1.00[CEU][hapmap] |
| rs59904713 | 0.88[EUR][1000 genomes] |
| rs61052532 | 0.82[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7147592 | 1.00[CEU][hapmap];1.00[JPT][hapmap] |
| rs7152492 | 1.00[CEU][hapmap] |
| rs73316485 | 0.91[EUR][1000 genomes] |
| rs73316486 | 0.91[EUR][1000 genomes] |
| rs73316494 | 0.91[EUR][1000 genomes] |
| rs73316497 | 0.91[EUR][1000 genomes] |
| rs73316501 | 0.91[EUR][1000 genomes] |
| rs73320491 | 1.00[ASN][1000 genomes] |
| rs73324436 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73324463 | 0.94[EUR][1000 genomes] |
| rs73324490 | 1.00[ASN][1000 genomes] |
| rs8003165 | 1.00[CEU][hapmap] |
| rs9323666 | 1.00[CEU][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv2760000 | chr14:78875607-79173528 | Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 2 | esv2758363 | chr14:78903610-79173528 | Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 3 | nsv1037999 | chr14:78966643-79026875 | Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 4 | nsv565235 | chr14:78978181-79027504 | Enhancers Weak transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
