Variant report

Variant	rs12434281
Chromosome Location	chr14:79022048-79022049
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10129570	1.00[CEU][hapmap]
rs10134028	1.00[CEU][hapmap]
rs10140699	1.00[CEU][hapmap]
rs1030123	1.00[YRI][hapmap]
rs11851070	1.00[CEU][hapmap]
rs12435130	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs12435691	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs12436458	1.00[CEU][hapmap]
rs12892860	1.00[CEU][hapmap]
rs17107446	0.87[CEU][hapmap]
rs17107725	1.00[CEU][hapmap]
rs17107847	0.85[CEU][hapmap]
rs17107884	1.00[ASW][hapmap]
rs17107903	1.00[ASW][hapmap]
rs2192416	1.00[CEU][hapmap]
rs59904713	0.94[EUR][1000 genomes]
rs7147592	1.00[CEU][hapmap]
rs7152492	1.00[CEU][hapmap];1.00[GIH][hapmap]
rs73316485	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73316486	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73316494	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73316497	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73316501	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73324436	0.94[EUR][1000 genomes]
rs73324463	1.00[EUR][1000 genomes]
rs9323666	1.00[CEU][hapmap];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2760000	chr14:78875607-79173528	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	esv2758363	chr14:78903610-79173528	Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1037999	chr14:78966643-79026875	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv565235	chr14:78978181-79027504	Enhancers Weak transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv9157	chr14:79021816-79024148	Bivalent/Poised TSS Enhancers ZNF genes & repeats Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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