Variant report

Variant	rs10140699
Chromosome Location	chr14:78987050-78987051
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:78987037..78987855-chr14:79028593..79029433,2	MCF-7	breast:

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs10129570	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs10132376	1.00[CHB][hapmap]
rs10134028	1.00[CEU][hapmap]
rs10138731	1.00[CHB][hapmap]
rs10141923	1.00[CHB][hapmap]
rs10483898	1.00[CHB][hapmap]
rs10873318	1.00[CHB][hapmap]
rs11851070	1.00[CEU][hapmap]
rs12323467	1.00[CHB][hapmap]
rs12431997	1.00[CHB][hapmap]
rs12432145	1.00[CHB][hapmap]
rs12432323	1.00[CHB][hapmap]
rs12434281	1.00[CEU][hapmap]
rs12435130	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs12435491	1.00[CHB][hapmap]
rs12435510	1.00[CHB][hapmap]
rs12435691	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs12436134	1.00[CHB][hapmap]
rs12436458	1.00[CEU][hapmap]
rs12437077	1.00[CHB][hapmap]
rs12892860	1.00[CEU][hapmap]
rs17107424	1.00[CHB][hapmap]
rs17107429	0.87[CEU][hapmap]
rs17107436	0.87[CEU][hapmap]
rs17107444	1.00[CHB][hapmap]
rs17107446	0.87[CEU][hapmap]
rs17107516	1.00[CHB][hapmap]
rs17107519	1.00[CHB][hapmap]
rs17107523	1.00[CHB][hapmap]
rs17107530	1.00[CHB][hapmap]
rs17107594	1.00[CHB][hapmap]
rs17107611	1.00[CHB][hapmap]
rs17107725	1.00[CEU][hapmap]
rs17107847	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap]
rs214016	0.85[CEU][hapmap]
rs214028	0.87[CEU][hapmap]
rs214029	0.87[CEU][hapmap]
rs214030	0.87[CEU][hapmap]
rs214031	0.87[CEU][hapmap]
rs2192416	1.00[CEU][hapmap]
rs2215835	0.87[CEU][hapmap]
rs2215836	0.86[CEU][hapmap]
rs59904713	0.83[EUR][1000 genomes]
rs61052532	1.00[ASN][1000 genomes]
rs7147592	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7152492	1.00[CEU][hapmap];0.87[TSI][hapmap]
rs732176	1.00[CHB][hapmap]
rs73316485	0.86[EUR][1000 genomes]
rs73316486	0.86[EUR][1000 genomes]
rs73316494	0.86[EUR][1000 genomes]
rs73316497	0.86[EUR][1000 genomes]
rs73316501	0.86[EUR][1000 genomes]
rs73320491	1.00[ASN][1000 genomes]
rs73324436	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73324463	0.89[EUR][1000 genomes]
rs73324490	1.00[ASN][1000 genomes]
rs8009240	0.85[CEU][hapmap]
rs8015539	1.00[CHB][hapmap]
rs9323666	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2760000	chr14:78875607-79173528	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	esv2758363	chr14:78903610-79173528	Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1037999	chr14:78966643-79026875	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv565235	chr14:78978181-79027504	Enhancers Weak transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
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