Variant report

Variant	rs17107594
Chromosome Location	chr14:78906703-78906704
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10132376	1.00[CHB][hapmap]
rs10138731	1.00[CHB][hapmap]
rs10140699	1.00[CHB][hapmap]
rs10141923	1.00[CHB][hapmap]
rs10483898	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap]
rs10873318	1.00[CHB][hapmap]
rs12323467	1.00[CHB][hapmap]
rs12431997	1.00[CHB][hapmap]
rs12432145	1.00[CHB][hapmap]
rs12432323	1.00[CHB][hapmap]
rs12435491	1.00[CHB][hapmap]
rs12435510	1.00[CHB][hapmap]
rs12436134	1.00[CHB][hapmap]
rs12437077	1.00[CHB][hapmap]
rs17107424	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17107429	1.00[MEX][hapmap]
rs17107444	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17107516	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs17107519	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs17107523	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs17107530	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs17107601	1.00[JPT][hapmap]
rs17107611	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17107847	1.00[CHB][hapmap]
rs56923572	1.00[AMR][1000 genomes]
rs58330928	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs59762056	1.00[AMR][1000 genomes]
rs59819728	1.00[AMR][1000 genomes]
rs61052532	1.00[AMR][1000 genomes]
rs7147592	1.00[CHB][hapmap]
rs732176	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs73316040	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs73316042	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs73316045	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs73316421	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73316436	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73316456	1.00[AMR][1000 genomes]
rs73316459	1.00[AMR][1000 genomes]
rs73316471	1.00[AMR][1000 genomes]
rs73316478	1.00[AMR][1000 genomes]
rs73320490	1.00[AMR][1000 genomes]
rs73320491	1.00[AMR][1000 genomes]
rs73324490	1.00[AMR][1000 genomes]
rs73327195	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs73327200	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs73329110	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs73329120	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs73329172	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs8015539	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9323666	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832837	chr14:78766805-78946526	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	esv2757577	chr14:78875607-78912967	Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	n/a
3	esv2760000	chr14:78875607-79173528	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	esv2758363	chr14:78903610-79173528	Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:78894400-78914600	Weak transcription	GM12878-XiMat	blood
2	chr14:78905800-78907600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr14:78906600-78907200	Enhancers	Brain Germinal Matrix	brain
4	chr14:78906600-78907400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links