Variant report

Variant	rs10483898
Chromosome Location	chr14:78809579-78809580
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:78807798..78810250-chr14:78831662..78833314,2	K562	blood:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10140699	1.00[CHB][hapmap]
rs17107424	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs17107429	1.00[MEX][hapmap]
rs17107444	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs17107516	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17107519	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17107523	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap]
rs17107530	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap]
rs17107594	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap]
rs17107601	1.00[JPT][hapmap]
rs17107611	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs214004	0.82[LWK][hapmap];0.81[YRI][hapmap]
rs57985933	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58024876	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59146318	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59588653	1.00[ASN][1000 genomes]
rs60262994	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61199699	0.87[ASN][1000 genomes]
rs61265887	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61572411	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs732176	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73308933	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73308938	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73308941	1.00[ASN][1000 genomes]
rs73308947	0.87[ASN][1000 genomes]
rs73308971	0.87[ASN][1000 genomes]
rs73308985	0.87[ASN][1000 genomes]
rs73309000	0.87[ASN][1000 genomes]
rs73310817	0.87[ASN][1000 genomes]
rs73310826	0.87[ASN][1000 genomes]
rs73319533	0.87[ASN][1000 genomes]
rs73319535	0.87[ASN][1000 genomes]
rs73319540	0.87[ASN][1000 genomes]
rs74064052	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8015539	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832837	chr14:78766805-78946526	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:78802200-78810000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr14:78808200-78809600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr14:78808800-78810200	Weak transcription	Brain Germinal Matrix	brain

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