Variant report
| Variant | rs57985933 |
|---|---|
| Chromosome Location | chr14:78803346-78803347 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:24)
| rs_ID | r2[population] |
|---|---|
| rs10483898 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17107424 | 0.87[ASN][1000 genomes] |
| rs17107444 | 0.87[ASN][1000 genomes] |
| rs58024876 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs59146318 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs59588653 | 1.00[ASN][1000 genomes] |
| rs60262994 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs61199699 | 0.87[ASN][1000 genomes] |
| rs61265887 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs61572411 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs732176 | 1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73308933 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73308938 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73308941 | 1.00[ASN][1000 genomes] |
| rs73308947 | 0.87[ASN][1000 genomes] |
| rs73308971 | 0.87[ASN][1000 genomes] |
| rs73308985 | 0.87[ASN][1000 genomes] |
| rs73309000 | 0.87[ASN][1000 genomes] |
| rs73310817 | 0.87[ASN][1000 genomes] |
| rs73310826 | 0.87[ASN][1000 genomes] |
| rs73319533 | 0.87[ASN][1000 genomes] |
| rs73319535 | 0.87[ASN][1000 genomes] |
| rs73319540 | 0.87[ASN][1000 genomes] |
| rs74064052 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv832837 | chr14:78766805-78946526 | Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| 2 | nsv1054051 | chr14:78772614-78805311 | Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Bivalent Enhancer | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 3 | nsv976838 | chr14:78799531-78804498 | Weak transcription Enhancers | n/a | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr14:78798000-78807400 | Weak transcription | Brain Germinal Matrix | brain |
| 2 | chr14:78802200-78810000 | Weak transcription | ES-UCSF4 Cell Line | embryonic stem cell |
