Variant report

Variant	rs17107444
Chromosome Location	chr14:78822438-78822439
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs10140699	1.00[CHB][hapmap]
rs10483898	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs17107424	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17107429	1.00[YRI][hapmap]
rs17107504	0.82[JPT][hapmap]
rs17107516	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs17107519	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs17107523	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs17107530	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17107594	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17107601	1.00[JPT][hapmap]
rs17107611	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17107847	1.00[CHB][hapmap]
rs2215835	1.00[YRI][hapmap]
rs2215836	1.00[YRI][hapmap]
rs55806332	1.00[AMR][1000 genomes]
rs55842090	1.00[EUR][1000 genomes]
rs56019115	1.00[EUR][1000 genomes]
rs56193432	1.00[AMR][1000 genomes]
rs56772228	1.00[AMR][1000 genomes]
rs57985933	0.87[ASN][1000 genomes]
rs58024876	0.87[ASN][1000 genomes]
rs58493810	1.00[EUR][1000 genomes]
rs59146318	0.87[ASN][1000 genomes]
rs59588653	0.87[ASN][1000 genomes]
rs60262994	0.87[ASN][1000 genomes]
rs61199699	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61265887	0.87[ASN][1000 genomes]
rs61467094	1.00[EUR][1000 genomes]
rs61572411	0.87[ASN][1000 genomes]
rs7147592	1.00[CHB][hapmap]
rs732176	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs73308933	0.87[ASN][1000 genomes]
rs73308938	0.87[ASN][1000 genomes]
rs73308941	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73308947	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73308971	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73308985	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73309000	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73310817	1.00[ASN][1000 genomes]
rs73310826	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73316006	0.88[ASN][1000 genomes]
rs73316040	0.81[ASN][1000 genomes]
rs73316042	0.81[ASN][1000 genomes]
rs73316045	0.81[ASN][1000 genomes]
rs73319533	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73319535	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73319540	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73327195	0.81[ASN][1000 genomes]
rs73327200	0.81[ASN][1000 genomes]
rs74064035	1.00[EUR][1000 genomes]
rs74064052	0.87[ASN][1000 genomes]
rs74065971	1.00[AMR][1000 genomes]
rs74065972	1.00[AMR][1000 genomes]
rs74065973	1.00[AMR][1000 genomes]
rs74065975	1.00[AMR][1000 genomes]
rs74065977	1.00[AMR][1000 genomes]
rs74065980	1.00[AMR][1000 genomes]
rs74065985	1.00[AMR][1000 genomes]
rs8015539	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9323662	1.00[EUR][1000 genomes]
rs9323666	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832837	chr14:78766805-78946526	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:78814600-78825600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr14:78820200-78826000	Enhancers	Brain Germinal Matrix	brain
3	chr14:78821600-78826600	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr14:78821600-78827000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr14:78822200-78823400	Enhancers	Brain Cingulate Gyrus	brain
6	chr14:78822200-78823800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr14:78822200-78825200	Enhancers	Brain Inferior Temporal Lobe	brain
8	chr14:78822400-78823000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
9	chr14:78822400-78823400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr14:78822400-78825400	Enhancers	Brain Anterior Caudate	brain

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