Variant report

Variant	rs73308985
Chromosome Location	chr14:78829959-78829960
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:78825123..78827565-chr14:78828633..78831114,2	K562	blood:

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10483898	0.87[ASN][1000 genomes]
rs17107424	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17107444	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17107516	0.81[ASN][1000 genomes]
rs17107519	0.81[ASN][1000 genomes]
rs17107523	0.81[ASN][1000 genomes]
rs55806332	1.00[AMR][1000 genomes]
rs55842090	1.00[EUR][1000 genomes]
rs56019115	1.00[EUR][1000 genomes]
rs56193432	1.00[AMR][1000 genomes]
rs56772228	1.00[AMR][1000 genomes]
rs57985933	0.87[ASN][1000 genomes]
rs58024876	0.87[ASN][1000 genomes]
rs58493810	1.00[EUR][1000 genomes]
rs59146318	0.87[ASN][1000 genomes]
rs59588653	0.87[ASN][1000 genomes]
rs60262994	0.87[ASN][1000 genomes]
rs61199699	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61265887	0.87[ASN][1000 genomes]
rs61467094	1.00[EUR][1000 genomes]
rs61572411	0.87[ASN][1000 genomes]
rs732176	0.87[ASN][1000 genomes]
rs73308933	0.87[ASN][1000 genomes]
rs73308938	0.87[ASN][1000 genomes]
rs73308941	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73308947	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73308971	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73309000	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73310817	0.95[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73310826	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73316006	0.88[ASN][1000 genomes]
rs73316040	0.81[ASN][1000 genomes]
rs73316042	0.81[ASN][1000 genomes]
rs73316045	0.81[ASN][1000 genomes]
rs73319533	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73319535	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73319540	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73327195	0.81[ASN][1000 genomes]
rs73327200	0.81[ASN][1000 genomes]
rs74064035	1.00[EUR][1000 genomes]
rs74064052	0.87[ASN][1000 genomes]
rs74065971	1.00[AMR][1000 genomes]
rs74065972	1.00[AMR][1000 genomes]
rs74065973	1.00[AMR][1000 genomes]
rs74065975	1.00[AMR][1000 genomes]
rs74065977	1.00[AMR][1000 genomes]
rs74065980	1.00[AMR][1000 genomes]
rs74065985	1.00[AMR][1000 genomes]
rs9323662	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832837	chr14:78766805-78946526	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:78826400-78833200	Weak transcription	Brain Germinal Matrix	brain
2	chr14:78827000-78833400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr14:78827400-78833200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr14:78827800-78831800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links