Variant report

Variant	rs61467094
Chromosome Location	chr14:78786776-78786777
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs17106938	1.00[EUR][1000 genomes]
rs17107424	1.00[EUR][1000 genomes]
rs17107444	1.00[EUR][1000 genomes]
rs55842090	1.00[EUR][1000 genomes]
rs56019115	1.00[EUR][1000 genomes]
rs56173300	1.00[AMR][1000 genomes]
rs58493810	1.00[EUR][1000 genomes]
rs61199699	1.00[EUR][1000 genomes]
rs73308941	1.00[EUR][1000 genomes]
rs73308947	1.00[EUR][1000 genomes]
rs73308971	1.00[EUR][1000 genomes]
rs73308985	1.00[EUR][1000 genomes]
rs73309000	1.00[EUR][1000 genomes]
rs73310826	1.00[EUR][1000 genomes]
rs74064035	1.00[EUR][1000 genomes]
rs74064084	1.00[AMR][1000 genomes]
rs74066520	1.00[AMR][1000 genomes]
rs74066542	1.00[AMR][1000 genomes]
rs9323662	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832837	chr14:78766805-78946526	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv1054051	chr14:78772614-78805311	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
3	esv2760350	chr14:78786077-78792004	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
4	nsv516814	chr14:78786159-78791625	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
5	nsv442347	chr14:78786335-78792002	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
6	esv2422026	chr14:78786339-78791625	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:78779200-78787000	Enhancers	Brain Germinal Matrix	brain
2	chr14:78783200-78794000	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr14:78785200-78787000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr14:78785400-78787200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr14:78786000-78786800	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr14:78786200-78786800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr14:78786200-78786800	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr14:78786400-78786800	Flanking Active TSS	K562	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links