Variant report

Variant	rs56019115
Chromosome Location	chr14:78794959-78794960
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs17106938	1.00[EUR][1000 genomes]
rs17107424	1.00[EUR][1000 genomes]
rs17107444	1.00[EUR][1000 genomes]
rs55842090	1.00[EUR][1000 genomes]
rs58493810	1.00[EUR][1000 genomes]
rs61199699	1.00[EUR][1000 genomes]
rs61467094	1.00[EUR][1000 genomes]
rs73308941	1.00[EUR][1000 genomes]
rs73308947	1.00[EUR][1000 genomes]
rs73308971	1.00[EUR][1000 genomes]
rs73308985	1.00[EUR][1000 genomes]
rs73309000	1.00[EUR][1000 genomes]
rs73310826	1.00[EUR][1000 genomes]
rs74064035	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74065982	1.00[AMR][1000 genomes]
rs9323662	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832837	chr14:78766805-78946526	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv1054051	chr14:78772614-78805311	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:78794200-78799000	Weak transcription	Fetal Brain Male	brain
2	chr14:78794600-78798000	Enhancers	Brain Germinal Matrix	brain
3	chr14:78794800-78796200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr14:78794800-78796200	Enhancers	Brain Anterior Caudate	brain
5	chr14:78794800-78796400	Enhancers	Pancreatic Islets	Pancreatic Islet

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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