Variant report

Variant	rs17107504
Chromosome Location	chr14:78871848-78871849
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs17107424	0.82[JPT][hapmap]
rs17107444	0.82[JPT][hapmap]
rs17107503	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17107513	1.00[CEU][hapmap];0.86[CHB][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17107516	0.82[JPT][hapmap]
rs17107519	0.82[JPT][hapmap]
rs17107535	1.00[CEU][hapmap]
rs17107601	0.82[JPT][hapmap]
rs3759727	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs7150932	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs732176	0.82[JPT][hapmap]
rs8007529	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832837	chr14:78766805-78946526	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:78869200-78872400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr14:78869400-78875000	Active TSS	GM12878-XiMat	blood
3	chr14:78870600-78873000	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr14:78870600-78873400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr14:78871000-78872000	Weak transcription	Brain Angular Gyrus	brain
6	chr14:78871000-78872600	Weak transcription	Brain Cingulate Gyrus	brain
7	chr14:78871200-78872400	Enhancers	Brain Anterior Caudate	brain
8	chr14:78871200-78872400	Enhancers	Brain Germinal Matrix	brain
9	chr14:78871200-78874400	Enhancers	Brain Substantia Nigra	brain
10	chr14:78871400-78873200	Weak transcription	Brain Hippocampus Middle	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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