Variant report

Variant	rs3759727
Chromosome Location	chr14:78868847-78868848
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs17107503	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs17107504	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs17107513	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17107535	1.00[CEU][hapmap]
rs17107884	1.00[JPT][hapmap]
rs2110425	1.00[JPT][hapmap]
rs7150932	1.00[CEU][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes]
rs8007529	1.00[CEU][hapmap]
rs8013226	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832837	chr14:78766805-78946526	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:78865200-78869400	Weak transcription	Brain Angular Gyrus	brain
2	chr14:78865400-78871200	Weak transcription	Brain Anterior Caudate	brain
3	chr14:78868000-78869400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr14:78868200-78870200	Enhancers	HSMM	muscle
5	chr14:78868400-78869400	Enhancers	GM12878-XiMat	blood
6	chr14:78868400-78870200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr14:78868400-78870400	Enhancers	NH-A	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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