Variant report

Variant	rs10132376
Chromosome Location	chr14:79032392-79032393
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:78630297..78631161-chr14:79032243..79033558,5	MCF-7	breast:
2	chr14:78487645..78489732-chr14:79030970..79033718,2	MCF-7	breast:

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10132085	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs10138082	0.82[CEU][hapmap]
rs10138731	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10140699	1.00[CHB][hapmap]
rs10141923	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10145600	0.82[CEU][hapmap]
rs10147304	0.82[CEU][hapmap]
rs10873318	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11159380	1.00[JPT][hapmap]
rs11845483	0.82[CEU][hapmap]
rs12100534	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12100535	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12323467	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12431997	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12432145	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12432323	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12434020	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12435491	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12435510	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12436134	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12437077	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12590068	1.00[CEU][hapmap]
rs17107516	1.00[CHB][hapmap]
rs17107519	1.00[CHB][hapmap]
rs17107523	1.00[CHB][hapmap]
rs17107530	1.00[CHB][hapmap]
rs17107594	1.00[CHB][hapmap]
rs17107611	1.00[CHB][hapmap]
rs17107847	1.00[CHB][hapmap]
rs17107968	0.82[CEU][hapmap]
rs1863032	1.00[JPT][hapmap]
rs2370825	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs28538310	0.93[EUR][1000 genomes]
rs28599647	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35834627	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4643247	1.00[CEU][hapmap]
rs60650553	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7147592	1.00[CHB][hapmap]
rs7160080	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs8015539	1.00[CHB][hapmap]
rs8018626	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs8021089	0.82[CEU][hapmap]
rs9323666	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2760000	chr14:78875607-79173528	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	esv2758363	chr14:78903610-79173528	Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:79030200-79032400	Weak transcription	Pancreas	Pancrea
2	chr14:79031600-79032600	Enhancers	Brain Germinal Matrix	brain
3	chr14:79031800-79032400	Enhancers	Skeletal Muscle Female	skeletal muscle
4	chr14:79032000-79032400	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr14:79032000-79032400	Enhancers	iPS-20b Cell Line	embryonic stem cell
6	chr14:79032000-79032400	Enhancers	Brain Hippocampus Middle	brain
7	chr14:79032000-79032600	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr14:79032000-79032600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr14:79032000-79033000	Enhancers	H9 Cell Line	embryonic stem cell
10	chr14:79032000-79033400	Enhancers	Fetal Muscle Leg	muscle
11	chr14:79032200-79032400	Enhancers	iPS-18 Cell Line	embryonic stem cell
12	chr14:79032200-79032400	Enhancers	Brain Angular Gyrus	brain
13	chr14:79032200-79032400	Enhancers	Brain Inferior Temporal Lobe	brain
14	chr14:79032200-79032400	Enhancers	Brain Substantia Nigra	brain
15	chr14:79032200-79032600	Enhancers	HUES6 Cell Line	embryonic stem cell
16	chr14:79032200-79033000	Enhancers	HUES48 Cell Line	embryonic stem cell
17	chr14:79032200-79033000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
18	chr14:79032200-79033000	Enhancers	Cortex derived primary cultured neurospheres	brain

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