Variant report

Variant	rs8018626
Chromosome Location	chr14:79060949-79060950
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10132085	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10132376	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs10138082	0.82[CEU][hapmap]
rs10138731	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs10141923	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs10145600	0.82[CEU][hapmap]
rs10147304	0.82[CEU][hapmap]
rs10873318	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs11845483	0.82[CEU][hapmap]
rs12100535	0.82[EUR][1000 genomes]
rs12323467	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs12431997	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs12432145	1.00[CEU][hapmap]
rs12432323	1.00[CEU][hapmap]
rs12434020	0.82[EUR][1000 genomes]
rs12435491	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs12435510	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs12436134	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs12437077	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs12437435	0.85[ASN][1000 genomes]
rs12586229	0.92[JPT][hapmap]
rs12588327	0.92[JPT][hapmap]
rs12590068	1.00[CEU][hapmap]
rs17107885	0.88[CHB][hapmap];0.92[JPT][hapmap];0.82[ASN][1000 genomes]
rs17107887	0.88[CHB][hapmap];0.92[JPT][hapmap];0.85[ASN][1000 genomes]
rs17107968	0.82[CEU][hapmap]
rs2370825	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs28538310	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs28599647	0.82[EUR][1000 genomes]
rs35834627	0.89[EUR][1000 genomes]
rs4643247	1.00[CEU][hapmap]
rs56813549	0.82[ASN][1000 genomes]
rs58525848	0.82[ASN][1000 genomes]
rs60650553	0.82[EUR][1000 genomes]
rs7150885	1.00[JPT][hapmap]
rs7160080	1.00[CEU][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs8021089	0.82[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2760000	chr14:78875607-79173528	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	esv2758363	chr14:78903610-79173528	Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	esv34435	chr14:79055398-79111151	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
4	esv2757578	chr14:79055398-79140536	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:79059200-79064400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr14:79059400-79064200	Weak transcription	Brain Anterior Caudate	brain
3	chr14:79059400-79064800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr14:79059800-79061600	Weak transcription	Brain Germinal Matrix	brain
5	chr14:79060800-79062000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr14:79060800-79064000	Weak transcription	Fetal Brain Male	brain

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