Variant report
| Variant | rs12586229 |
|---|---|
| Chromosome Location | chr14:79031670-79031671 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr14:78487645..78489732-chr14:79030970..79033718,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:34)
| rs_ID | r2[population] |
|---|---|
| rs10132085 | 0.89[CHB][hapmap];0.93[JPT][hapmap];0.92[ASN][1000 genomes] |
| rs1035612 | 1.00[AFR][1000 genomes] |
| rs12587427 | 1.00[AFR][1000 genomes] |
| rs12588327 | 1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.98[ASN][1000 genomes] |
| rs12588444 | 1.00[AFR][1000 genomes] |
| rs17107869 | 1.00[AFR][1000 genomes] |
| rs17107885 | 0.88[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.91[ASN][1000 genomes] |
| rs17107887 | 0.88[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.88[ASN][1000 genomes] |
| rs17107898 | 1.00[AFR][1000 genomes] |
| rs17107907 | 1.00[AFR][1000 genomes] |
| rs17107912 | 1.00[AFR][1000 genomes] |
| rs17107978 | 1.00[AFR][1000 genomes] |
| rs17107986 | 1.00[AFR][1000 genomes] |
| rs17107993 | 1.00[AFR][1000 genomes] |
| rs17108011 | 1.00[AFR][1000 genomes] |
| rs17108021 | 1.00[AFR][1000 genomes] |
| rs17108073 | 1.00[AFR][1000 genomes] |
| rs17108078 | 1.00[AFR][1000 genomes] |
| rs2287495 | 1.00[AFR][1000 genomes] |
| rs2370825 | 0.89[CHB][hapmap];0.92[JPT][hapmap];0.92[ASN][1000 genomes] |
| rs28538310 | 0.92[ASN][1000 genomes] |
| rs56658384 | 1.00[AFR][1000 genomes] |
| rs56813549 | 1.00[AFR][1000 genomes];0.91[ASN][1000 genomes] |
| rs57388154 | 1.00[AFR][1000 genomes] |
| rs58271165 | 1.00[AFR][1000 genomes] |
| rs58355788 | 1.00[AFR][1000 genomes] |
| rs58525848 | 1.00[AFR][1000 genomes];0.91[ASN][1000 genomes] |
| rs59354957 | 1.00[AFR][1000 genomes];0.96[ASN][1000 genomes] |
| rs7142533 | 1.00[AFR][1000 genomes] |
| rs7150885 | 0.92[JPT][hapmap] |
| rs7153070 | 1.00[AFR][1000 genomes] |
| rs7160080 | 0.92[JPT][hapmap];0.92[ASN][1000 genomes] |
| rs8003025 | 1.00[AFR][1000 genomes] |
| rs8018626 | 0.92[JPT][hapmap] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv2760000 | chr14:78875607-79173528 | Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 2 | esv2758363 | chr14:78903610-79173528 | Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr14:79023400-79032200 | Weak transcription | ES-UCSF4 Cell Line | embryonic stem cell |
| 2 | chr14:79030200-79032400 | Weak transcription | Pancreas | Pancrea |
| 3 | chr14:79031600-79032600 | Enhancers | Brain Germinal Matrix | brain |
