Variant report

Variant	rs10132085
Chromosome Location	chr14:79032085-79032086
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:78487645..78489732-chr14:79030970..79033718,2	MCF-7	breast:

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10132376	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs10138082	0.82[CEU][hapmap]
rs10138731	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs10141923	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs10145600	0.82[CEU][hapmap]
rs10147304	0.82[CEU][hapmap]
rs10873318	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs11845483	0.82[CEU][hapmap]
rs12100534	0.87[EUR][1000 genomes]
rs12100535	1.00[EUR][1000 genomes]
rs12323467	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs12431997	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs12432145	1.00[CEU][hapmap]
rs12432323	1.00[CEU][hapmap]
rs12434020	1.00[EUR][1000 genomes]
rs12435491	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs12435510	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs12436134	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs12437077	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs12586229	0.89[CHB][hapmap];0.93[JPT][hapmap];0.92[ASN][1000 genomes]
rs12588327	0.89[CHB][hapmap];0.93[JPT][hapmap];0.90[ASN][1000 genomes]
rs12590068	1.00[CEU][hapmap]
rs17107885	0.92[JPT][hapmap];0.83[ASN][1000 genomes]
rs17107887	0.92[JPT][hapmap];0.80[ASN][1000 genomes]
rs17107968	0.82[CEU][hapmap]
rs2370825	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.90[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28538310	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28599647	1.00[EUR][1000 genomes]
rs35834627	0.93[EUR][1000 genomes]
rs4643247	1.00[CEU][hapmap]
rs56813549	0.83[ASN][1000 genomes]
rs58525848	0.83[ASN][1000 genomes]
rs59354957	0.88[ASN][1000 genomes]
rs60650553	1.00[EUR][1000 genomes]
rs7150885	1.00[JPT][hapmap]
rs7160080	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8018626	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs8021089	0.82[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2760000	chr14:78875607-79173528	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	esv2758363	chr14:78903610-79173528	Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:79023400-79032200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr14:79030200-79032400	Weak transcription	Pancreas	Pancrea
3	chr14:79031600-79032600	Enhancers	Brain Germinal Matrix	brain
4	chr14:79031800-79032400	Enhancers	Skeletal Muscle Female	skeletal muscle
5	chr14:79032000-79032400	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr14:79032000-79032400	Enhancers	iPS-20b Cell Line	embryonic stem cell
7	chr14:79032000-79032400	Enhancers	Brain Hippocampus Middle	brain
8	chr14:79032000-79032600	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr14:79032000-79032600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr14:79032000-79033000	Enhancers	H9 Cell Line	embryonic stem cell
11	chr14:79032000-79033400	Enhancers	Fetal Muscle Leg	muscle

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