Variant report

Variant	rs7150885
Chromosome Location	chr14:79054271-79054272
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10131136	0.80[CEU][hapmap]
rs10132085	1.00[JPT][hapmap]
rs12586229	0.92[JPT][hapmap]
rs12588327	0.92[JPT][hapmap]
rs17107885	0.92[JPT][hapmap]
rs17107887	0.92[JPT][hapmap]
rs2370825	1.00[JPT][hapmap]
rs7146567	1.00[CEU][hapmap]
rs7160080	1.00[JPT][hapmap]
rs8005495	1.00[CEU][hapmap]
rs8017049	1.00[CEU][hapmap]
rs8018456	1.00[CEU][hapmap]
rs8018626	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2760000	chr14:78875607-79173528	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	esv2758363	chr14:78903610-79173528	Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:79052200-79054800	Weak transcription	Brain Germinal Matrix	brain
2	chr14:79053000-79055400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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